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Top Forums Shell Programming and Scripting Rename text file with a specific pattern in directory Post 302991356 by cmccabe on Thursday 9th of February 2017 01:09:38 PM
Old 02-09-2017
Rename text file with a specific pattern in directory

I am trying to rename all text files in a directory that match a pattern. The current command below seems to be using the directory path in the name and since it already exists, will not do the rename. I am not sure what I am missing? Thank you Smilie.


Files to rename in /home/cmccabe/Desktop/test/vcf/overall/annovar
Code:
16-0000_File-A_variant_strandbias_readcount.vcf.hg19_multianno_dbremoved_removed_final_index_inheritence_import_classify.txt
16-0002_File-B_variant_strandbias_readcount.vcf.hg19_multianno_dbremoved_removed_final_index_inheritence_import_classify.txt
16-0005_File-C_variant_strandbias_readcount.vcf.hg19_multianno_dbremoved_removed_final_index_inheritence_import_classify.txt

desired output
Code:
16-0000_File-A_hg19multianno.txt
16-0002_File-B_hg19multianno.txt
16-0005_File-C_hg19multianno.txt

Code:
rename 's/(.*?_[^_]+).*/${1}_hg19multianno.txt/g' /home/cmccabe/Desktop/test/vcf/overall/annovar/*_classify.txt

 

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ECACCESS-FILE-MOVE(1p)					User Contributed Perl Documentation				    ECACCESS-FILE-MOVE(1p)

NAME
ecaccess-file-move - Move or Rename ECaccess Files SYNOPSIS
ecaccess-file-move -version|-help|-manual ecaccess-file-move [-debug] source-ecaccess-file target-ecaccess-file DESCRIPTION
Allow moving an ECaccess File. When the move occurs within the same ECaccess File System then it is a rename. When the move occurs across two different ECaccess File Systems then first a copy is done and then a delete of the original file is done (e.g. similar to ecaccess- file-copy ... -erase). The source-ecaccess-file and target-ecaccess-file are in the form [domain:][/user-id/]path. Please read the "Shell commands -> File Management" section of the "ecaccess" guide for more information on the ECaccess File System. ARGUMENTS
source-ecaccess-file The source ECaccess File name. target-ecaccess-file The target ECaccess File name. OPTIONS
-version Display version number and exits. -help Print a brief help message and exits. -manual Prints the manual page and exits. -debug Display the SOAP messages exchanged. EXAMPLES
ecaccess-file-move ec:test1.txt ec:test2.txt Rename the test1.txt file in the ECFS directory of the authenticated user in test2.txt. ecaccess-file-move ec:test1.txt home:test2.txt Copy the test1.txt file from the ECFS directory of the authenticated user to the test2.txt file in the $HOME directory of the authenticated user, then delete the test1.txt file from ECFS. SEE ALSO
ecaccess-file-delete, ecaccess-file-get, ecaccess-file-mget, ecaccess-file-modtime, ecaccess-file-mput, ecaccess-file-rmdir, ecaccess-file- copy, ecaccess-file-dir, ecaccess-file-mdelete, ecaccess-file-mkdir, ecaccess-file-chmod, ecaccess-file-put, ecaccess-file-size and ecaccess. perl v5.14.2 2012-04-16 ECACCESS-FILE-MOVE(1p)
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