TRANSFORMIX(1)							   User Commands						    TRANSFORMIX(1)

NAME

       transformix - apply geometric transform to an image

SYNOPSIS

       transformix mandatory-args [optional-args]

DESCRIPTION

       transformix applies a transform on an input image and/or generates a deformation field.	The transform is specified in the transform-param-
       eter file.

OPTIONS

       Call transformix from the command line with mandatory arguments:

       -out	 output directory

       -tp	 transform-parameter file, only 1

       Optional extra commands:

       -in	 input image to deform

       -def	 file containing input-image points

	      the point are transformed according to the specified transform-parameter file use "-def  all"  to  transform  all  points  from  the
	      input-image, which effectively generates a deformation field.

       -jac	 use "-jac all" to generate an image with the determinant of the spatial Jacobian

       -jacmat	 use "-jacmat all" to generate an image with the spatial Jacobian matrix at each voxel

       -priority set the process priority to high or belownormal (Windows only)

       -threads  set the maximum number of threads of transformix
	      At least one of the options "-in", "-def", "-jac", or "-jacmat" should be given.

       The  transform-parameter  file must contain all the information necessary for transformix to run properly. That includes which transform to
       use, with which parameters, etc.  For a usable transform-parameter file, see the output of elastix.

SEE ALSO

       elastix(1)

       Check the website http://elastix.isi.uu.nl, or mail elastix.support@gmail.com.

transformix version: 4.400					   December 2010						    TRANSFORMIX(1)