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Full Discussion: Snps annotation
Top Forums UNIX for Beginners Questions & Answers Snps annotation Post 302990584 by Don Cragun on Saturday 28th of January 2017 11:18:57 PM
Old 01-29-2017
You might have mentioned that the code you quoted above came from a different thread (Map snps into a ref gene file) in which your first input file had two fields (with headings POS and ID) instead of the three fields (with headings CHROM, POS, and ID) that you are showing in this thread.

Did you think that I wouldn't recognize code I suggested for you a week ago if you reposted it in a different thread without attribution?

Why don't you try to modify that code to print the header line you now say that you want and to align the fields captured from the first input file with where that data is located in your new specification for that input file, instead of just saying that code that you implied you wrote doesn't work?
 

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URLCODING(3)						 libbash urlcoding Library Manual					      URLCODING(3)

NAME
urlcoding -- a Libbash library for encoding and decoding URL's. SYNOPSIS
urlEncodeString [-l] <STRING> urlEncodeFile [-l] <FILE> urlEncodeStream [-l] urlDecodeString <STRING> urlDecodeFile <FILENAME> urlDecodeStream DESCRIPTION
urlcoding is a collection of functions that convert ASCII-text to standard URL's and vice-versa. The AWK code used is based on code by Heiner Steven <heiner.steven@odn.de> The function list: urlEncodeString Creates a URL from an ASCII string urlEncodeFile Converts a file into URL-valid text urlEncodeStream Converts standard input into URL-valid text urlDecodeString Converts a URL-encoded text back to a plain-text form urlDecodeFile Coverts URL-encoded text in a file back to plain text urlDecodeStream Converts URL-encoded standard input to text Detailed interface description follows. The [-l] option for the encoding functions should be used when line-feed characters (' ') are to be encoded as well. All functions print the results of their conversions to standard output. The exit status of all functions is that of the command 'awk', with '0' for success FUNCTIONS DESCRIPTIONS
urlEncodeString [-l] <STRING> Converts STRING - a string of ASCII characters - to URL. urlEncodeFile [-l] <FILE> Coverts FILE of URL-encoded text to plain text urlEncodeStream [-l] Converts text from standard input to URL-text. urlDecodeString <STRING> Converts URL-encoded string STRING back to text. urlDecodeFile <FILENAME> Converts the URL-encoded text in FILE to plain text. urlDecodeStream Converts the URL-encoded text from standard input to plain-text AUTHORS
Alon Keren <alon.keren@gmail.com> SEE ALSO
ldbash(1), libbash(1) Linux Epoch Linux
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