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Top Forums Shell Programming and Scripting Removing White spaces from a huge file Post 302990011 by amvip on Friday 20th of January 2017 02:16:10 PM
Old 01-20-2017
Removing White spaces from a huge file

I am trying to remove whitespaces from a file containing sample data as:
Code:
457 <EOFD> Mar  1 2007 12:00:00:000AM   <EOFD> Mar 31 2007 12:00:00:000AM   <EOFD>  system  <EORD> 458 <EOFD>    Mar  1 2007 12:00:00:000AM<EOFD>agf <EOFD> Apr 20 2007  9:10:56:036PM    <EOFD>  prodiws<EORD>

. Basically these files are delimited extracted files from a database with the delimiters as <EOFD>
I am using the below command to remove the whitespace
perl -pi -e 's/[[:space:]]*\<EOFD\>[[:space:]]*/\<EOFD\>/g' sample.dat

The above command is part of shell scripts t.ksh which is being invoked on the command line and internally runs the perl command.
It is working fine for moderately huge files but once the file reaches a conderable huge size, say 2.2 -3 GB, it empties the file content and the scripts exist with the below error:

./t.ksh[249]: 700492 Memory fault(coredump)
Server Message: <my unix machine name>- Msg 208, Level 16, State 1:


[249] - this points to my perl command. Also, I see a huge coredump file getting created in the directory from where I am invoking the shell script t.ksh. The file system has adequate space.

Can someone advise whats wrong here or any workaround?

Regards

Last edited by Scrutinizer; 01-22-2017 at 06:59 AM.. Reason: icode -> code tags
 

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exit(1) 							   User Commands							   exit(1)

NAME
exit, return, goto - shell built-in functions to enable the execution of the shell to advance beyond its sequence of steps SYNOPSIS
sh exit [n] return [n] csh exit [ ( expr )] goto label ksh *exit [n] *return [n] DESCRIPTION
sh exit will cause the calling shell or shell script to exit with the exit status specified by n. If n is omitted the exit status is that of the last command executed (an EOF will also cause the shell to exit.) return causes a function to exit with the return value specified by n. If n is omitted, the return status is that of the last command exe- cuted. csh exit will cause the calling shell or shell script to exit, either with the value of the status variable or with the value specified by the expression expr. The goto built-in uses a specified label as a search string amongst commands. The shell rewinds its input as much as possible and searches for a line of the form label: possibly preceded by space or tab characters. Execution continues after the indicated line. It is an error to jump to a label that occurs between a while or for built-in command and its corresponding end. ksh exit will cause the calling shell or shell script to exit with the exit status specified by n. The value will be the least significant 8 bits of the specified status. If n is omitted then the exit status is that of the last command executed. When exit occurs when executing a trap, the last command refers to the command that executed before the trap was invoked. An end-of-file will also cause the shell to exit except for a shell which has the ignoreeof option (See set below) turned on. return causes a shell function or '.' script to return to the invoking script with the return status specified by n. The value will be the least significant 8 bits of the specified status. If n is omitted then the return status is that of the last command executed. If return is invoked while not in a function or a '.' script, then it is the same as an exit. On this man page, ksh(1) commands that are preceded by one or two * (asterisks) are treated specially in the following ways: 1. Variable assignment lists preceding the command remain in effect when the command completes. 2. I/O redirections are processed after variable assignments. 3. Errors cause a script that contains them to abort. 4. Words, following a command preceded by ** that are in the format of a variable assignment, are expanded with the same rules as a vari- able assignment. This means that tilde substitution is performed after the = sign and word splitting and file name generation are not performed. ATTRIBUTES
See attributes(5) for descriptions of the following attributes: +-----------------------------+-----------------------------+ | ATTRIBUTE TYPE | ATTRIBUTE VALUE | |Availability |SUNWcsu | +-----------------------------+-----------------------------+ SEE ALSO
break(1), csh(1), ksh(1), sh(1), attributes(5) SunOS 5.10 15 Apr 1994 exit(1)
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