One might think that something more like:
would work, but since absolutely none of the positions specified in your 1st sample input file are in any of the ranges specified by your 2nd sample input file, no output is produced. I guess that is to be expected because I asked you what output you wanted your script to produce from your sample input files and you didn't give an answer to that question.
If this doesn't work for your real data, you might consider giving us some sample input that you think should produce some output and actually show us what output you are trying to produce from those inputs.
If you want to try this on a Solaris/SunOS system, change awk to /usr/xpg4/bin/awk or nawk.
Hi!
1. I have a parameter file containing path to log files. For this example both paths are the same, one is stated directly and the second using env variables.
/oracle/admin/orcl/bdump/:atlas:trc:N
${ORACLE_BASE}/admin/${ORACLE_SID}/bdump/:${ORACLE_SID}:trc:N
2. I try to parse the path... (1 Reply)
Hi, my problem is that I have two files. File no. 1 is a gff text file (say gi1) that has gene information like :
********************
gene 39389788..39395643
/gene="RPSA"
/note="Derived by automated computational analysis using
... (2 Replies)
Hi, all:
My writed network device driver works fine when the transmitted file is under several MegaBytes, but above this size, especially dozens of or hundreds of MegaBytes, the kernel panic ocurres! I check the kern.log and find this error :
522 Nov 14 19:35:32 liklstar-server kerneNov 14... (2 Replies)
I had two files 1.txt 2.txt. I want a 3rd file(o/p) 3.txt like below based on the common elements from the first coulmns of 1.txt and 2.txt.
1.txt
11
12
13
14
15
16
17
18
19
20
21
2.txt (6 Replies)
Hey,
I've been trying to break a massive fasta formatted file into files containing each gene separately. Could anyone help me? I've tried to use the following code but i've recieved errors every time:
for i in *.rtf.out
do
awk '/^>/{f=++d".fasta"} {print > $i.out}' $i
done (1 Reply)
Hi,
May i ask if someone share some command for extracting a string between 2 ref string in a txt file
My objective: i had a file with multiple lines and wants only to extract the string "watch?v=IbkAXOmEHpY" or "watch?v=<11 random character>", when i used "grep 'watch?=*' i got a results per... (4 Replies)
I am trying to modify the awk below to include the gene name ($5) for each target and can not seem to do so. Also, I'm not sure the calculation is right (average of all targets that are the same is $4 using the values in $7)? Thank you :).
awk '{if((NR>1)&&($4!=last)){printf("%s\t%f\t%s\n",... (1 Reply)
I have the following Snps data
CHROM POS ID
chr7 78599583 rs987435
chr15 33395779 rs987436
chr1 189807684 rs987437
chr20 33907909 rs987438
chr12 75664046 rs987439
and the following gene data
genename name chrom strand txstart txend... (8 Replies)
Discussion started by: marwah
8 Replies
LEARN ABOUT CENTOS
wnstats
WNSTATS(7) WordNettm WNSTATS(7)NAME
wnstats - WordNet 3.0 database statistics
DESCRIPTION
Number of words, synsets, and senses
+----------+---------+---------+------------------+
| POS | Unique | Synsets | Total |
| | Strings | | Word-Sense Pairs |
+----------+---------+---------+------------------+
|Noun | 117798 | 82115 | 146312 |
|Verb | 11529 | 13767 | 25047 |
|Adjective | 21479 | 18156 | 30002 |
|Adverb | 4481 | 3621 | 5580 |
+----------+---------+---------+------------------+
|Totals | 155287 | 117659 | 206941 |
+----------+---------+---------+------------------+
Polysemy information
+----------+------------------+------------+------------+
| POS | Monosemous | Polysemous | Polysemous |
| | Words and Senses | Words | Senses |
+----------+------------------+------------+------------+
|Noun | 101863 | 15935 | 44449 |
|Verb | 6277 | 5252 | 18770 |
|Adjective | 16503 | 4976 | 14399 |
|Adverb | 3748 | 733 | 1832 |
+----------+------------------+------------+------------+
|Totals | 128391 | 26896 | 79450 |
+----------+------------------+------------+------------+
+----------+----------------------------+----------------------------+
| POS | Average Polysemy | Average Polysemy |
| | Including Monosemous Words | Excluding Monosemous Words |
+----------+----------------------------+----------------------------+
|Noun | 1.24 | 2.79 |
|Verb | 2.17 | 3.57 |
|Adjective | 1.40 | 2.71 |
|Adverb | 1.25 | 2.50 |
+----------+----------------------------+----------------------------+
NOTES
Statistics for all types of adjectives and adjective satellites are combined.
The total of all unique noun, verb, adjective, and adverb strings is actually 147278. However, many strings are unique within a syntactic
category, but are in more than one syntactic category. The figures in the table represent the unique strings in each syntactic category.
WordNet 3.0 Dec 2006 WNSTATS(7)