I'm expecting that a gene might have more than snpID,
and there might be genes that don't have snps it will be NA
and there might be one snpID for pre one gene
Hi!
1. I have a parameter file containing path to log files. For this example both paths are the same, one is stated directly and the second using env variables.
/oracle/admin/orcl/bdump/:atlas:trc:N
${ORACLE_BASE}/admin/${ORACLE_SID}/bdump/:${ORACLE_SID}:trc:N
2. I try to parse the path... (1 Reply)
Hi, my problem is that I have two files. File no. 1 is a gff text file (say gi1) that has gene information like :
********************
gene 39389788..39395643
/gene="RPSA"
/note="Derived by automated computational analysis using
... (2 Replies)
Hi, all:
My writed network device driver works fine when the transmitted file is under several MegaBytes, but above this size, especially dozens of or hundreds of MegaBytes, the kernel panic ocurres! I check the kern.log and find this error :
522 Nov 14 19:35:32 liklstar-server kerneNov 14... (2 Replies)
I had two files 1.txt 2.txt. I want a 3rd file(o/p) 3.txt like below based on the common elements from the first coulmns of 1.txt and 2.txt.
1.txt
11
12
13
14
15
16
17
18
19
20
21
2.txt (6 Replies)
Hey,
I've been trying to break a massive fasta formatted file into files containing each gene separately. Could anyone help me? I've tried to use the following code but i've recieved errors every time:
for i in *.rtf.out
do
awk '/^>/{f=++d".fasta"} {print > $i.out}' $i
done (1 Reply)
Hi,
May i ask if someone share some command for extracting a string between 2 ref string in a txt file
My objective: i had a file with multiple lines and wants only to extract the string "watch?v=IbkAXOmEHpY" or "watch?v=<11 random character>", when i used "grep 'watch?=*' i got a results per... (4 Replies)
I am trying to modify the awk below to include the gene name ($5) for each target and can not seem to do so. Also, I'm not sure the calculation is right (average of all targets that are the same is $4 using the values in $7)? Thank you :).
awk '{if((NR>1)&&($4!=last)){printf("%s\t%f\t%s\n",... (1 Reply)
I have the following Snps data
CHROM POS ID
chr7 78599583 rs987435
chr15 33395779 rs987436
chr1 189807684 rs987437
chr20 33907909 rs987438
chr12 75664046 rs987439
and the following gene data
genename name chrom strand txstart txend... (8 Replies)
Discussion started by: marwah
8 Replies
LEARN ABOUT PHP
maxdb_connect_error
MAXDB_CONNECT_ERROR(3) 1 MAXDB_CONNECT_ERROR(3)maxdb_connect_error - Returns a string description of the last connect errorSYNOPSIS
string maxdb_connect_error (void )
DESCRIPTION
The maxdb_connect_error(3) function is identical to the corresponding maxdb_connect_errno(3) function in every way, except instead of
returning an integer error code the maxdb_connect_error(3) function will return a string representation of the last error to occur for the
last maxdb_connect(3) call. If no error has occurred, this function will return an empty string.
RETURN VALUES
A string that describes the error. An empty string if no error occurred.
EXAMPLES
Example #1
maxdb_connect_error sample
<?php
$link = maxdb_connect("localhost", "nonexisting_user", "");
if (!$link) {
printf("Can't connect to localhost. Error: %s
", maxdb_connect_error());
}
?>
The above example will output something similar to:
PHP Warning: maxdb_connect(): -4008POS(1) Unknown user name/password combination <...>
Can't connect to localhost. Error: POS(1) Unknown user name/password combination
SEE ALSO maxdb_connect(3), maxdb_connect_errno(3), maxdb_errno(3), maxdb_error(3), maxdb_sqlstate(3).
PHP Documentation Group MAXDB_CONNECT_ERROR(3)