awk to remove lines where field count is greather than 1 in two fields
I am trying to remove all the lines and spaces where the count in $4 or $5 is greater than 1 (more than 1 letter). The file and the output are tab-delimited. Thank you .
file
desired output
awk
Last edited by cmccabe; 01-09-2017 at 03:11 PM..
Reason: added details
Dear All,
I would like to add values of a field, if the lines match in a certain field. Then I would like to divide the sum though the number of lines that have a matched field. This is the Input:
Input:
Test1 5
Test1 10
Test2 2
Test2 5
Test2 13
Test3 4
Output:
Test1 7.5
Test1 7.5... (6 Replies)
Hi.
I have a tab separated file that has a couple nearly identical lines. When doing:
sort file | uniq > file.new
It passes through the nearly identical lines because, well, they still are unique.
a)
I want to look only at field x for uniqueness and if the content in field x is the... (1 Reply)
Hi,
I used to count number of fields using following command head -1 <filename> | awk -F"," '{print NF}'
Now the scenario is the delimiter(comma) occurs inside one of the data field. How to ignore the comma inside data and consider only delimiter and count number of fields. The fields are... (1 Reply)
Hello All,
I got a requirement when I was working with a file. Say the file has unloads of data from a table in the form
1|121|asda|434|thesi|2012|05|24|
1|343|unit|09|best|2012|11|5|
I was put into a scenario where I need the field count in all the lines in that file. It was simply... (6 Replies)
Hi experts,
I need to print the first field first then last two fields should come next and then i need to print rest of the fields.
Input :
a1,abc,jsd,fhf,fkk,b1,b2
a2,acb,dfg,ghj,b3,c4
a3,djf,wdjg,fkg,dff,ggk,d4,d5
Expected output:
a1,b1,b2,abc,jsd,fhf,fkk... (6 Replies)
When I use the below awk to count the unique lines in $4 for the input it seems to work. The answer is 3 because $4 is only unique 3 times in all the entries. However, when I use the same on actual data I get 56,536 and I know the answer should be 56,548. My question is there a better way to... (8 Replies)
I am trying to remove lines in the target.txt file if $5 before the - in that file matches sorted_list. I have tried grep and awk. Thank you :).
grep
grep -v -F -f targets.bed sort_list
grep -vFf sort_list targets
awk
awk -F, '
> FILENAME == ARGV {to_remove=1; next}
> ! ($5 in... (2 Replies)
Hi Folks,
I have a file with fields as follows which has last field in multiple lines. I would like to combine a line which has three fields with single field line for as shown in expected output. Please help.
INPUT
hname01 windows appnamec1eda_p1, ... (5 Replies)
In the awk below I am trying to print the entire line, along with the header row, if $2 is SNV or MNV or INDEL. If that condition is met or is true, and $3 is less than or equal to 0.05, then in $7 the sub pattern :GMAF= is found and the value after the = sign is checked. If that value is less than... (0 Replies)