Is there a way to get the command line arguments.
I am using getopt(3) but if the arguments are more than one for a particular option than it just ignores the second argument. For eg
./a.out -x abc def
now abd will be got with -x using getopt "( x : )" and string abc\0def will get stored... (7 Replies)
Hi
How to pass multi line text as a command line argument to a program.
(i.e)
./a.out hi this is sample 0 file1
where
hi this is sample should be stored in argv
0 in argv and so on... (3 Replies)
Hi all,
How many arguments can we pass while testing a prgm at command line..
I encountered an issue while passing 10 arguments.
For $10 its taking argument passed for $1 followed by 'zero'.
can we pass more than 9 arguments /Is there any other way.
Thanks,
rrs (6 Replies)
Hi all
i want to list out all command line arguments except $1 i have passed to a script.
Ex: sh cmdline.sh one two three four five
o/p:
two three four five (3 Replies)
--------------------------------------------------------------------------------
I have this while loop and at the end I am trying to get it to tell me the last argument I entered. And with it like this all I get is the sentence with no value for $1. Now I tried moving done after the sentence... (1 Reply)
I am working on a script wherein i need the user to enter the Build ID
for eg:the command line will show
enter the build ID
Now on entering the build ID it should be assigned to @ARGV.
How can this be done.? (1 Reply)
hi, can someone how to accept command line arguments as a variable using in script?
like: ./scriptname arguments
by accept arguments, I can use it in my script?
thx! (1 Reply)
I am new to the world of Unix and shell scripting and have been trying to get the following simple script to work:
#!/bin/bash
echo "what is your age?"
echo "you are $1 years old"I want to be able to enter my age on the command line, when prompted, and it return the... (1 Reply)
hi,,,,
I want to create a command prompt, for example "prompt>", so my prompt need to handle commands, for example "prompt>cmd", so i want to know how to get arguments for my own commands cmd, i.e. default argc should contain arguments count and argv should point to the argument vector i.e, for... (2 Replies)
Hi all,
I am trying to write a code for addition of n numbers which will be passed by the user as command line arguments.
I wrote the following code.
add=0
for (( i = 1 ; i <= $# ; i++ ))
do
add=`expr $i + $add`
done
#echo "sum is : $add"
input :
$./add.sh 12 32 14... (7 Replies)
Discussion started by: PranavEcstasy
7 Replies
LEARN ABOUT DEBIAN
bio::seqfeature::gene::genestructurei
Bio::SeqFeature::Gene::GeneStructureI(3pm) User Contributed Perl Documentation Bio::SeqFeature::Gene::GeneStructureI(3pm)NAME
Bio::SeqFeature::Gene::GeneStructureI - A feature representing an arbitrarily
complex structure of a gene
SYNOPSIS
#documentation needed
DESCRIPTION
A feature representing a gene structure.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one
of the Bioperl mailing lists. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Hilmar Lapp
Email hlapp@gmx.net
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
transcripts
Title : transcripts()
Usage : @transcripts = $gene->transcripts();
Function: Get the transcript features/sites of this gene structure.
See Bio::SeqFeature::Gene::TranscriptI for properties of the
returned objects.
Returns : An array of Bio::SeqFeature::Gene::TranscriptI implementing objects
representing the promoter regions or sites.
Args :
promoters
Title : promoters()
Usage : @prom_sites = $gene->promoters();
Function: Get the promoter features/sites of this gene structure.
Note that OO-modeling of regulatory elements is not stable yet.
This means that this method might change or even disappear in a
future release. Be aware of this if you use it.
Returns : An array of Bio::SeqFeatureI implementing objects representing the
promoter regions or sites.
Args :
exons
Title : exons()
Usage : @exons = $gene->exons();
@inital = $gene->exons('Initial');
Function: Get all exon features or all exons of specified type of this gene
structure.
Refer to the documentation of the class that produced this gene
structure object for information about the possible types.
See Bio::SeqFeature::Gene::ExonI for properties of the
returned objects.
Returns : An array of Bio::SeqFeature::Gene::ExonI implementing objects
representing the exon regions.
Args : An optional string specifying the type of the exon.
introns
Title : introns()
Usage : @introns = $gene->introns();
Function: Get all introns of this gene structure.
Returns : An array of Bio::SeqFeatureI implementing objects representing the
introns.
Args :
poly_A_sites
Title : poly_A_sites()
Usage : @polyAsites = $gene->poly_A_sites();
Function: Get the poly-adenylation features/sites of this gene structure.
Returns : An array of Bio::SeqFeatureI implementing objects representing the
poly-adenylation regions or sites.
Args :
utrs
Title : utrs()
Usage : @utr_sites = $gene->utrs();
Function: Get the UTR features/sites of this gene structure.
See Bio::SeqFeature::Gene::ExonI for properties of the
returned objects.
Returns : An array of Bio::SeqFeature::Gene::ExonI implementing objects
representing the UTR regions or sites.
Args :
perl v5.14.2 2012-03-02 Bio::SeqFeature::Gene::GeneStructureI(3pm)