Hello UNIX experts,
I have 124 text files in a directory. I want to extract the 45678th line of all the files sequentialy by file names. The extracted lines should be printed in the output file on seperate lines.
e.g. The input Files are one.txt, two.txt, three.txt, four.txt
The cat of four... (1 Reply)
I have a large 3479 line .csv file, the content of which looks likes this:
1;0;177;170;Guadeloupe;x
2;127;171;179;Antigua and Barbuda;x
3;170;144;2;Umpqua;x
4;170;126;162;Coos Bay;x
...
1205;46;2;244;Unmak Island;x
1206;47;2;248;Yunaska Island;x
1207;0;2;240;north sea;x... (5 Replies)
I would like to print the output beginning with a header from a seperate file like this:
awk 'BEGIN{FS="_";print ((getline < "header.txt")>0)} { if (! ($0 ~ /EL/ ) print }" input.txtWhat am i doing wrong? (4 Replies)
I have email headers that look like the following. In the end I would like to accomplish sending each email address to its own variable, such as:
user1@domain.com='user1@domain.com'
user2@domain.com='user2@domain.com'
user3@domain.com='user3@domain.com'
etc...
I know the sed to get rid of... (11 Replies)
Hello,
:wall:
I have a 12 column csv file. I wish to delete the entire line if column 7 = hello and column 12 = goodbye. I have tried everything that I can find in all of my ref books.
I know this does not work
/^*,*,*,*,*,*,"hello",*,*,*,*,"goodbye"/d
Any ideas?
Thanks
Please... (2 Replies)
performing this code to read from file and print each character in separate line
works well with ASCII encoded text
void
preprocess_file (FILE *fp)
{
int cc;
for (;;)
{ cc = getc (fp);
if (cc == EOF)
break;
printf ("%c\n", cc);
}
}
int
main(int... (1 Reply)
Hello:
I want to print out the even number of fields plus the first column as row identifiers.
input.txt
ID X1 ID X2 ID X3 ID X4
A 700 A 1200 A 400 A 1300
B 2000 B 1000 B 2000 B 600
C 1400 C 200 C 1000 C 1200
D 1300 D 500 D 600 D 200and the output is:
output.txt
ID X1 X2 X3... (3 Replies)
example of problem:
when I echo "$e" >> /home/cogiz/file.txt
result prints to file as:AA
BB
CC
I need it to save to file as this:AA BB CC
I know it's probably something really simple but any help would be greatly appreciated.
Thank You.
Cogiz (7 Replies)
In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited,
that are in $1 of gene which is just a single column of text.
However only the line with the greatest $9 value in input needs to be printed.
So in the example below all the MECP2 and LTBP1... (0 Replies)
datafile:
2017-03-24 10:26:22.098566|5|'No Route for Sndr:RETEK RMS 00040 /ZZ Appl:PF Func:PD Txn:832 Group Cntr:None ISA CntlNr:None Ver:003050 '|'2'|'PFI'|'-'|'EAI_ED_DeleteAll'|'EAI_ED'|NULL|NULL|NULL|139050594|ActivityLog|
2017-03-27 02:50:02.028706|5|'No Route for... (7 Replies)
Discussion started by: SkySmart
7 Replies
LEARN ABOUT DEBIAN
ace::sequence::gene
Ace::Sequence::Gene(3pm) User Contributed Perl Documentation Ace::Sequence::Gene(3pm)NAME
Ace::Sequence::Gene - Simple "Gene" Object
SYNOPSIS
# open database connection and get an Ace::Object sequence
use Ace::Sequence;
# get a megabase from the middle of chromosome I
$seq = Ace::Sequence->new(-name => 'CHROMOSOME_I,
-db => $db,
-offset => 3_000_000,
-length => 1_000_000);
# get all the genes
@genes = $seq->genes;
# get the exons from the first one
@exons = $genes[0]->exons;
# get the introns
@introns = $genes[0]->introns
# get the CDSs (NOT IMPLEMENTED YET!)
@cds = $genes[0]->cds;
DESCRIPTION
Ace::Sequence::Gene is a subclass of Ace::Sequence::Feature. It inherits all the methods of Ace::Sequence::Feature, but adds the ability
to retrieve the annotated introns and exons of the gene.
OBJECT CREATION
You will not ordinarily create an Ace::Sequence::Gene object directly. Instead, objects will be created in response to a genes() call to
an Ace::Sequence object.
OBJECT METHODS
Most methods are inherited from Ace::Sequence::Feature. The following methods are also supported:
exons()
@exons = $gene->exons;
Return a list of Ace::Sequence::Feature objects corresponding to annotated exons.
introns()
@introns = $gene->introns;
Return a list of Ace::Sequence::Feature objects corresponding to annotated introns.
cds()
@cds = $gene->cds;
Return a list of Ace::Sequence::Feature objects corresponding to coding sequence. THIS IS NOT YET IMPLEMENTED.
relative()
$relative = $gene->relative;
$gene->relative(1);
This turns on and off relative coordinates. By default, the exons and intron features will be returned in the coordinate system used
by the gene. If relative() is set to a true value, then coordinates will be expressed as relative to the start of the gene. The first
exon will (usually) be 1.
SEE ALSO
Ace, Ace::Object, Ace::Sequence,Ace::Sequence::Homol, Ace::Sequence::Feature, Ace::Sequence::FeatureList, GFF
AUTHOR
Lincoln Stein <lstein@cshl.org> with extensive help from Jean Thierry-Mieg <mieg@kaa.crbm.cnrs-mop.fr>
Copyright (c) 1999, Lincoln D. Stein
This library is free software; you can redistribute it and/or modify it under the same terms as Perl itself. See DISCLAIMER.txt for
disclaimers of warranty.
POD ERRORS
Hey! The above document had some coding errors, which are explained below:
Around line 148:
You forgot a '=back' before '=head1'
perl v5.14.2 2001-02-18 Ace::Sequence::Gene(3pm)