#!/bin/sh

# file with list of name with incomplete output
incomplete_case_list=$1
# file being processed (replace incomplete rows with modified data)
final_temp1=$2
# output file
final_temp2=$3

# read in fail file and create array of names
while read line; do 

   # read tab separated line into array
   unset FIELD;   IFS=$'\t' read -a FIELD <<< "$line"

   # add each name to array
   fail_list=("${fail_list[@]}" "${FIELD[0]}")

done < $incomplete_case_list

# flag to avoid second print if line was replaced
replaced='0'

# loop through all rows of file to check for fail names
# check the name for each row against all names in name array, look for match
while read line; do 

   # read tab separated line into array
   unset FIELD;   IFS=$'\t' read -a FIELD <<< "$line"

   # check current line against each element in array of fail names
   for fail_name in "${fail_list[@]}"
   do

      # check name filed (0), if a match is found, print modified line
      if [ "${FIELD[0]}" == "$fail_name" ]; then

         # output modified row to next temp file
         echo -e 'NAME;'${FIELD[0]}'\t''failed' >> $final_temp2

         # set flag to indicate row has been replaced, don't print again
         replaced='1'
      fi
   done

   # if name was not found in the  fail array, print original line
   if [ "$replaced" == '0' ]; then
      echo -e ${FIELD[0]}'\t'${FIELD[1]} >> $final_temp2
   fi
   # reinitialize flag
   replaced='0'

done < $final_temp1

echo -e $line >> final_temp2