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Top Forums Shell Programming and Scripting Add unique identifier from file to filetype in directory Post 302986492 by Don Cragun on Friday 25th of November 2016 07:00:50 PM
Old 11-25-2016
Are you trying to rename *.bam and *.vcf files? Or, only *.bam files? There is nothing in your current script that does anything with *.vcf files, is there?

Do you only want to rename the files in the directory /home/cmccabe/Desktop/index/R_2016_09_21_14_01_15_user_S5-00580-9-Medexome? Or do you want to rename the files in all of the directories in /home/cmccabe/Desktop/index/ that are named in your input file?

Do you need to look at the directory name to determine which name change needs to occur, or will the "unique identifiers" found in your input file be unique across all directories?
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GIT-MV(1)							    Git Manual								 GIT-MV(1)

NAME
git-mv - Move or rename a file, a directory, or a symlink SYNOPSIS
git mv <options>... <args>... DESCRIPTION
This script is used to move or rename a file, directory or symlink. git mv [-v] [-f] [-n] [-k] <source> <destination> git mv [-v] [-f] [-n] [-k] <source> ... <destination directory> In the first form, it renames <source>, which must exist and be either a file, symlink or directory, to <destination>. In the second form, the last argument has to be an existing directory; the given sources will be moved into this directory. The index is updated after successful completion, but the change must still be committed. OPTIONS
-f, --force Force renaming or moving of a file even if the target exists -k Skip move or rename actions which would lead to an error condition. An error happens when a source is neither existing nor controlled by Git, or when it would overwrite an existing file unless -f is given. -n, --dry-run Do nothing; only show what would happen -v, --verbose Report the names of files as they are moved. GIT
Part of the git(1) suite Git 1.8.3.1 06/10/2014 GIT-MV(1)
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