The wildcard globbing can match none, one, or several files.
Perhaps you don't need the wildcard globbing at all? The following simply strips off the .txt and appends .vcf
This User Gave Thanks to MadeInGermany For This Post:
I am trying to process error files in selected directories. I can count the files that are there and export the contents to a file for either emailing or printing. The next step is to move the files to a processed directory with the name changed to .fixed as the last extension.
for file in... (2 Replies)
I am trying to write a housekeeping bash script. Part of it involves searching all of my attached storage media for photographs and moving them into a single directory. The problem occurs when files have duplicate names, obviously a file called 001.jpg will get overwritten with another file... (6 Replies)
Hi,
I am trying to find the content of file using grep and find command and list only the file names
but i am getting entire file list of files in the directory
find . -exec grep "test" {} \; -ls
Can anyone of you correct this (2 Replies)
Hi
I am running a shell script with bdf command and want to match all files with length 3 inside a specific partitions. How do i do that
say
for example if i want to list all files with length 3 in /home/jimmy partition,
bdf /home/jimmy
the output i need is
xyx
abc
yyy
amp
... (4 Replies)
Hi All ,
I am having confusion in a shell script. Please guide me.
I need to get multiple files (number of files vary time to time, file names are separated by '|') using FTP get from the remote server.
Actually, i call the FTP function in a loop. At the last step, i need to move all the get... (3 Replies)
Suppose I have a file which contains other file names with some extention .
text file containt
gdsds sd8ef g/f/temp_temp.sum yyeta t/unix.sum
ghfp hrwer h/y/test.text.dat
if then....
I want to get the complete file names, like for above file I should get output as
temp_temp.sum... (4 Replies)
Hi,
As a newbie, I'm desperate ro make my shell script work. I'd like a script which checks all the files in a directory, check the file name, if the file name ends with "extracted", store it in a variable, if it has a suffix of ".roi" stores in another variable. I'm going to use these two... (3 Replies)
Hello all,
I need to print directories using find command. The directories names contain date in the format YYYYMMDD or the name of directory is only the date format. I want print directories, which doesn't start with this date.
E.g I have dirs like
foo20120101
foo20120101foo
20120101foo... (1 Reply)
I have a .CSV file (frequency - weekly) whose header contains the year-week value in two of the columns which keeps changing every week. For an instance please see below.
Column1,Column2,Column3,Column4,Column5,Column6,Column7,Column8,Column9,Column10,Column11,Column12,Column13,201420... (4 Replies)
HI Folks -
I have a requirement where I need to scan a text file for a list of files.
The file, we'll called it, files.txt looks like such:
inbox/EBS/Client_GL_Detail_PBCS_112517_SEP2017.txt
inbox/EBS/Client_GL_Detail_PBCS_112617_NOV2017.txt
... (9 Replies)
Discussion started by: SIMMS7400
9 Replies
LEARN ABOUT DEBIAN
vcf-isec
VCF-ISEC(1) User Commands VCF-ISEC(1)NAME
vcf-isec - create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files
SYNOPSIS
vcf-isec [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Create intersections, unions, complements on bgzipped and tabix indexed VCF or tab-delimited files.
Note that lines from all files can be intermixed together on the output, which can yield unexpected results.
OPTIONS -C, --chromosomes <list|file>
Process the given chromosomes (comma-separated list or one chromosome per line in a file).
-c, --complement
Output positions present in the first file but missing from the other files.
-d, --debug
Debugging information
-f, --force
Continue even if the script complains about differing columns.
-o, --one-file-only
Print only entries from the left-most file. Without -o, all unique positions will be printed.
-n, --nfiles [+-=]<int>
Output positions present in this many (=), this many or more (+), or this many or fewer (-) files.
-p, --prefix <path>
If present, multiple files will be created with all possible isec combinations. (Suitable for Venn Diagram analysis.)
-t, --tab <chr:pos:file>
Tab-delimited file with indexes of chromosome and position columns. (1-based indexes)
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
EXAMPLES
bgzip file.vcf; tabix -p vcf file.vcf.gz bgzip file.tab; tabix -s 1 -b 2 -e 2 file.tab.gz
vcf-isec 0.1.5 July 2011 VCF-ISEC(1)