Thank you for the suggestion it lead me to the below which produces the desired result:
Code:
for f in /home/cmccabe/Desktop/20x/percent/*.txt ; do
bname=$(basename $f)
pref=${bname%%_base_*.txt}
awk '{ sum += $2 } END { if (NR > 0) print sum / NR }' $f /home/cmccabe/Desktop/NGS/bed/bedtools/IDP_total_target_length_by_panel/IDP_unix_trim_total_target_length.bed > /home/cmccabe/Desktop/20x/coverage/${pref}_average.txt
done
Thank you for your help .
Note that instead of starting a subshell for the command substitution and invoking the basename utility for every file you process, you can change:
Code:
bname=$(basename $f)
to:
Code:
bname=${f##*/}
to make it more efficient and a little bit faster while getting exactly the same results.
Hi I have fakebook.csv as following:
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6
6
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Hello,
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Hey guys,
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My old school way is a one liner. And will search for average from SAR, to get the data receive rate. But, I dont think it is practical or accurate,. Because it calculates to off peak hours. I am planning to change it. My cron runs every 30 mins. When my cron runs, and my time is 14:47pm,, it will... (1 Reply)
Discussion started by: invinzin21
1 Replies
LEARN ABOUT LINUX
rbash
RBASH(1) General Commands Manual RBASH(1)NAME
rbash - restricted bash, see bash(1)RESTRICTED SHELL
If bash is started with the name rbash, or the -r option is supplied at invocation, the shell becomes restricted. A restricted shell is
used to set up an environment more controlled than the standard shell. It behaves identically to bash with the exception that the follow-
ing are disallowed or not performed:
o changing directories with cd
o setting or unsetting the values of SHELL, PATH, ENV, or BASH_ENV
o specifying command names containing /
o specifying a file name containing a / as an argument to the . builtin command
o specifying a filename containing a slash as an argument to the -p option to the hash builtin command
o importing function definitions from the shell environment at startup
o parsing the value of SHELLOPTS from the shell environment at startup
o redirecting output using the >, >|, <>, >&, &>, and >> redirection operators
o using the exec builtin command to replace the shell with another command
o adding or deleting builtin commands with the -f and -d options to the enable builtin command
o using the enable builtin command to enable disabled shell builtins
o specifying the -p option to the command builtin command
o turning off restricted mode with set +r or set +o restricted.
These restrictions are enforced after any startup files are read.
When a command that is found to be a shell script is executed, rbash turns off any restrictions in the shell spawned to execute the script.
SEE ALSO bash(1)GNU Bash-4.0 2004 Apr 20 RBASH(1)
10-05-2016
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