while read file1 file2
awk -F'\t' -v OFS='\t' 'FNR==1 { next }
FNR == NR { file1[$2,$4,$5] = $2 FS $4 FS $5 }
FNR != NR { file2[$2,$4,$5] = $2 FS $4 FS $5 }
END { print "Match:"; for (k in file1) if (k in file2) print file1[k] # Or file2[k]
print "Missing in Reference but found in IDP:"; for (k in file2) if (!(k in file1)) print file2[k]
print "Missing in IDP but found in Reference:"; for (k in file1) if (!(k in file2)) print file1[k]
}'/home/cmccabe/Desktop/comparison/reference/10bp/$file1 /home/cmccabe/Desktop/comparison/validation/files/$file2 > /home/cmccabe/Desktop/comparison/ref_val/concordance.txt
done < "/home/cmccabe/Desktop/comparison/ref_val/out"
Code:
I give the full path to each:
file1
file2
out
Thank you .
Hello cmccabe,
As we have requested mutiple times, kindly do mention complete details about what's happening and what's not. Though you have used code as I suggested in post#2 but you haven't mention either that approach worked or not. Because you haven't showed us what are there in those Input_files(how Input_file looks with sample data) it is difficult to tell that you command will work or not, please let us know the complete details about your requirements with sample Input_file and ecpected output of your requirements with error messages(if any) you code by running any suggestions or your own codes, I hope this helps.
Thanks,
R. Singh
This User Gave Thanks to RavinderSingh13 For This Post:
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