chr1 11796321 G 0 WILD ADP=1026
chr1 169549811 C 0 WILD ADP=940
chr1 173917078 C 0 WILD ADP=501
chr2 48962782 C T HET ADP=1665
chr4 121696962 C T HET ADP=212
chr4 121697011 A 0 WILD ADP=184
chr4 121697037 T 0 WILD ADP=111
chr4 121697037 tccc 0 INDEL AINDEL
chr4 121697056 C 0 WILD ADP=112
chr11 46739505 G 0 WILD ADP=202
chr13 20189511 C 0 WILD ADP=326
chr13 20189546 AC A INDEL ADP=164
chr13 20189547 C 0 WILD ADP=3
desired output
Code:
chr1 11796321 MTHFR G 0 WILD ADP=1026
chr1 169549811 F5 C 0 WILD ADP=940
chr1 173917078 SERPINC1 C 0 WILD ADP=501
chr2 48962782 FSHR C T HET ADP=1665
chr4 121696962 ANXA5 C T HET ADP=212
chr4 121697011 ANXA5 A 0 WILD ADP=184
chr4 121697037 ANXA5 T 0 WILD ADP=111
chr4 121697037 ANXA5 tccc 0 INDEL AINDEL
chr4 121697056 ANXA5 C 0 WILD ADP=112
chr11 46739505 F2 G 0 WILD ADP=202
chr13 20189511 GJB2 C 0 WILD ADP=326
chr13 20189546 GJB2 AC A INDEL ADP=164
chr13 20189547 GJB2 C 0 WILD ADP=3
I am trying to print the output of a command to two separate files. Is it possible to use awk to print $1 to one file and $2 to another file?
Thanks in advance! (1 Reply)
Hello!
I am writing a program to run through two large lists of data (~300,000 rows), find where rows in one file match another, and combine them based on matching fields. Due to the large file sizes, I'm guessing AWK will be the most efficient way to do this. Overall, the input and output I'm... (5 Replies)
Hi unix gurus,
I have a urgent requirement, I need to write a AWK script to compare each fields in 2 files using AWK.
Basically my output should be like this.
file1
row|num1|num2|num3
1|one|two|three
2|one|two|three
file2
row|num1|num2|num3
1|one|two|three
2|one|two|four
... (5 Replies)
Hi All,
Looking for a quick AWK script to output some differences between two files.
FILE1
device1 1.1.1.1 PINGS
device1 2.2.2.2 PINGS
FILE2
2862 SITE1 device1-prod 1.1.1.1 icmp - 0 ... (4 Replies)
Hi,
I have two files formatted as following:
File 1: (user_num_ID , realID) (the NR here is 41671)
1 cust_034_60
2 cust_80_91
3 cust_406_4
..
..
File 2: (realID , clusterNumber) (total NR here is 1000)
cust_034_60 2
cust_406_4 3
..
.. (11 Replies)
Hello Friends,
I just need a small help, I need an awk program which can join 2 fields of different files which are having one common field into one file.
File - 1
FileName~Size
File- 2
FileName~Date
I need the output file in the following way
O/P- File
FileName~Date~Size
For... (4 Replies)
I'm trying to sum each field of the second column over many different files.
For example:
file1: file2:
1 5 1 5
2 6 2 4
3 5 3 3
To get:
file3
1 10
2 10
3 8
I found answer when there are only 2 files as... (10 Replies)
Hi,
I have 2 tab-delimited input files as follows.
file1.tab:
green A apple
red B apple
file2.tab:
apple - A;Z
Objective:
Return $1 of file1 if,
. $1 of file2 matches $3 of file1 and,
. any single element (separated by ";") in $3 of file2 is present in $2 of file1
In order to... (3 Replies)
Hi, I have two TEST files t.xyz and a.xyz which have three columns each. a.xyz have more rows than t.xyz. I will like to output rows at which $1 and $2 of t.xyz match $1 and $2 of a.xyz. Total number of output rows should be equal to that of t.xyz.
It works fine, but when I apply it to large... (6 Replies)