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Full Discussion: Bash to select text and apply it to a selected file in bash
Top Forums Shell Programming and Scripting Bash to select text and apply it to a selected file in bash Post 302982542 by cmccabe on Thursday 29th of September 2016 04:57:30 PM
Old 09-29-2016
Did I add it in the wrong place? Thanks.

Code:
FILESDIR=/home/cmccabe/Desktop/ref/validation/val
PANELDIR=/home/cmccabe/Desktop/ref/validation/panels

PS3="please select a panel: "

cd "$PANELDIR"
select bed in $(ls *.txt)
do    [ "$bed" != "" ] && break
done

PS3="please select a file to analyze with a panel: "

cd "$FILESDIR"
select file1 in $(ls *.vcf)
do    [ "$file1" != "" ] && break
done
      printf "FILE is: ${file1} and will be used filtered to ${bed} \n"
      read -r -p "Is this correct? [y/N] " response
    if [[ $response =~ ^[nN][oO]?$ ]]
         then
         echo 'please try again'  && exit
    else
    fi
logfile="/home/cmccabe/Desktop/ref/validation/val/process.log"
for f in /home/cmccabe/Desktop/ref/validation/val/$file1 ; do
     echo "Start filter creation: $(date) - File: $f"
     bname=$(basename $f)
     pref=${bname%%_*.txt}
     grep -wFf /home/cmccabe/Desktop/ref/validation/panels/$bed $f >/home/cmccabe/Desktop/ref/validation/filtered/${pref}_filtered.txt
     echo "End filder creation: $(date) - File: $f"
done >> "$logfile"
syntax error near unexpected token `fi

 

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LEARN ABOUT DEBIAN

gnome-panel-preferences

gnome-panel-preferences(1)					   User Commands					gnome-panel-preferences(1)

NAME

       gnome-panel-preferences - configure the behavior of panels

SYNOPSIS

       gnome-panel-preferences [gnome-std-options]

DESCRIPTION

       The Panel preference tool enables you to configure the behavior of all of your panels.

OPTIONS

       The following options are supported:

       gnome-std-optionStandard options available for use with most GNOME applications. See gnome-std-options(5).

EXAMPLES

       Example 1: Launching the Panel preference tool

       example% gnome-panel-preferences

EXIT STATUS

       The following exit values are returned:

       0	Application exited successfully

       >0	Application exited with failure

FILES

       The following files are used by this application:

       /usr/bin/gnome-panel-preExecutable for Panel preferences tool

ATTRIBUTES

       See attributes(5) for descriptions of the following attributes:

       +-----------------------------+-----------------------------+
       |      ATTRIBUTE TYPE	     |	    ATTRIBUTE VALUE	   |
       +-----------------------------+-----------------------------+
       |Availability		     |SUNWgnome-panel		   |
       +-----------------------------+-----------------------------+
       |Interface stability	     |External			   |
       +-----------------------------+-----------------------------+

SEE ALSO

       Preference Tools Manual

       Latest version of the GNOME Desktop User Guide for your platform.

       gnome-panel(1), gnome-std-options(5)

NOTES

       Written by Glynn Foster, Sun Microsystems  Inc., 2003.

SunOS 5.10							    2 Oct 2003						gnome-panel-preferences(1)
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