Sponsored Content
Top Forums UNIX for Beginners Questions & Answers Concatenate column values when header is Matching from multiple files Post 302982114 by RudiC on Saturday 24th of September 2016 06:02:52 AM
Old 09-24-2016
For any number or order of fields, any order of lines, missing fields across files, try
Code:
awk '
FNR == 1        {for (n=split($0, T); n>1; n--) if (!(T[n] in HDK)) HDK[T[n]] = ++HDC
                 F1 = T[1]
                 next
                }

!($1 in NM)     {NM[$1]
                 NMS[++SQ] = $1
                }

                {for (i=2; i<=NF; i++) NC[$1,T[i]] = NC[$1,T[i]] (NC[$1,T[i]]?"/":"") $i
                }

END             {printf "%s", F1
                 for (h in HDK) printf "\t%s", h
                 printf RS

                 for (i=1; i<=SQ; i++)  {printf "%s", NMS[i]
                                         for (h in HDK) printf "\t%s", NC[NMS[i],h]
                                         printf RS
                                        } 
                }
'  file[123]
Name	9/1	9/2	9/3
X	1/25	7/19/31	13
y	2/26	8/20/32	14
z	3/27	9/33	
a	4/28	10/22/34	16
b	5/29	11/23/35	17
c	6/30	12/24/36	18
Z		21	15

The second input file has an upper case "Z" as a name, and "9/3" as a new and unique column header. Output fields are separated by <TAB> chars, the misleading output picture is due to the varying length of Col 2...
This User Gave Thanks to RudiC For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Joining multiple files based on one column with different and similar values (shell or perl)

Hi, I have nine files looking similar to file1 & file2 below. File1: 1 ABCA1 1 ABCC8 1 ABR:N 1 ACACB 1 ACAP2 1 ACOT1 1 ACSBG 1 ACTR1 1 ACTRT 1 ADAMT 1 AEN:N 1 AKAP1File2: 1 A4GAL 1 ACTBL 1 ACTL7 (4 Replies)
Discussion started by: seqbiologist
4 Replies

2. Shell Programming and Scripting

Rename a header column by adding another column entry to the header column name URGENT!!

Hi All, I have a file example.csv which looks like this GrpID,TargetID,Signal,Avg_Num CSCH74_1_1,2007,61,256 CSCH74_1_1,212007,647,679 CSCH74_1_1,12007,3,32 CSCH74_1_1,207,299,777 I want the output as GrpID,TragetID,Signal-CSCH74_1_1,Avg_Num CSCH74_1_1,2007,61,256... (4 Replies)
Discussion started by: Vavad
4 Replies

3. UNIX for Dummies Questions & Answers

Rename a header column by adding another column entry to the header column name

Hi All, I have a file example.csv which looks like this GrpID,TargetID,Signal,Avg_Num CSCH74_1_1,2007,61,256 CSCH74_1_1,212007,647,679 CSCH74_1_1,12007,3,32 CSCH74_1_1,207,299,777 I want the output as GrpID,TragetID,Signal-CSCH74_1_1,Avg_Num CSCH74_1_1,2007,61,256... (1 Reply)
Discussion started by: Vavad
1 Replies

4. UNIX for Dummies Questions & Answers

shift values in one column as header for values in another column

Hi Gurus, I have a tab separated text file with two columns. I would like to make the first column values as headings for the second column values. Ex. >value1 subjects >value2 priorities >value3 requirements ...etc and I want to have a file >value1 subjects >value2 priorities... (4 Replies)
Discussion started by: Unilearn
4 Replies

5. Shell Programming and Scripting

Compare values in two files. For matching rows print corresponding values from File 1 in File2.

- I have two files (File 1 and File 2) and the contents of the files are mentioned below. - I am trying to compare the values of Column1 of File1 with Column1 of File2. If a match is found, print the corresponding value from Column2 of File1 in Column5 of File2. - I tried to modify and use... (10 Replies)
Discussion started by: Santoshbn
10 Replies

6. Shell Programming and Scripting

Sum values of specific column in multiple files, considering ranges defined in another file

I have a file (let say file B) like this: File B: A1 3 5 A1 7 9 A2 2 5 A3 1 3 The first column defines a filename and the other two define a range in that specific file. In the same directory, I have also three more files (File A1, A2 and A3). Here is 10 sample lines... (3 Replies)
Discussion started by: Bastami
3 Replies

7. Shell Programming and Scripting

Sum column values matching other field

this is part of a KT i am going thru. i am writing a script in bash shell, linux where i have 2 columns where 1st signifies the nth hour like 00, 01, 02...23 and 2nd the file size. sample data attached. Desired output is 3 columns which will give the nth hour, number of entries in nth hour and... (3 Replies)
Discussion started by: alpha_1
3 Replies

8. Shell Programming and Scripting

Extracting values based on line-column numbers from multiple text files

Dear All, I have to solve the following problems with multiple tab-separated text file but I don't know how. Any help would be greatly appreciated. I have access to Linux mint (but not as a professional). I have multiple tab-delimited files with the following structure: file1: 1 44 2 ... (5 Replies)
Discussion started by: Bastami
5 Replies

9. Shell Programming and Scripting

Concatenate values in the first column based on the second column.

I have a file (myfile.txt) with contents like this: 1.txt apple is 3.txt apple is 5.txt apple is 2.txt apple is a 7.txt apple is a 8.txt apple is a fruit 4.txt orange not a fruit 6.txt zero isThe above file is already sorted using this command: sort -k2 myfile.txtMy objective is to get... (3 Replies)
Discussion started by: shoaibjameel123
3 Replies

10. Shell Programming and Scripting

Comparing same column from two files, printing whole row with matching values

First I'd like to apologize if I opened a thread which is already open somewhere. I did a bit of searching but could quite find what I was looking for, so I will try to explaing what I need. I'm writing a script on our server, got to a point where I have two files with results. Example: File1... (6 Replies)
Discussion started by: mitabrev83
6 Replies
join(1) 						      General Commands Manual							   join(1)

Name
       join - join files

Syntax
       join [ -a n] [ -e string] [ -j  n m] [ -o list] [ -t c]	file1 file2

Description
       The  command  compares a field in file1 to a field in file2.  If the two fields match, the command combines the line in file1 that contains
       the field with the line in file2 that contains the field.  The command writes its output to standard output.  If you specify a  hyphen  (-)
       in the file1 argument, compares standard input to the contents of file2.

       The command compares and combines the input files one line at a time. Each line in the input file contains one field that uses to determine
       if two lines should be joined.  This field is called the join field. By default, the command uses the first field in each line as the  join
       field.	The  command  compares	the join field in the first line of file1 to the join field in the first line of file2.  If the two fields
       match, the command joins the lines.  The command then compares the join fields in the second line of both files, and so on.

       In the input files, fields are separated by tab or space characters.  The command reads data from the first field until it encounters a tab
       or  space  character,  which  terminates the first field.   By default, the command ignores tab and space characters, so the next character
       that is not a tab or space begins the second field.  The second field is terminated by the tab or space that  follows  it,  and	the  third
       field begins with the next character that is not a tab or space.  The command reads fields in this way until it encounters a new line char-
       acter.  Any number of tabs or spaces can separate two fields, and any number of newline characters can separate two lines.

       Both file1 and file2 must be ordered in the collating sequence of the command on the fields that  the  two  files  are  to  be  joined.	By
       default, uses the first field in each line and collates the same as

       To  create  output,  the  command writes the join field, followed by the remaining fields in the line from file1, followed by the remaining
       fields in the line from file2 to the output file.  The following demonstrates how lines in the  output appear by default:
       join_field file1.field2 file1.field3 file1.field4 file2.field2 file2.field3

       By default, the command ignores lines that do not contain identical join fields.  The command writes no output for these lines.

       You can change how creates output using command options.  For example, you can cause the command to write output for lines that do not con-
       tain  identical	join  fields.	You  can  also	specify  a  list  using  the option.  In list, you supply a list of specifiers in the form
       file.field, where file is either 1 or 2 and field is the number of the field.  For example, 1.2 specifies the second  field  in	the  first
       file  and 2.4 specifies the fourth field in the second file. The following demonstrates how lines in the output appear if you use these two
       specifiers:
       file1.field2 field2.field4

   International Environment
       LC_COLLATE     If this environment variable is set and valid, uses the international language database named in the definition to determine
		      collation rules.

       LC_CTYPE       If this environment variable is set and valid, uses the international language database named in the definition to determine
		      character classification rules.

       LANG	      If this environment variable is set and valid uses the international language database named in the definition to  determine
		      collation  and character classification rules.  If LC_COLLATE or LC_CTYPE is defined their definition supercedes the defini-
		      tion of LANG.

Options
       -a[n]	   Write lines that contain unmatched join fields to the output file.  You can cause the command to  write  unmatched  lines  from
		   only  one  file  using  n.  If you specify 1 in n, writes unmatched lines only from file 1.	If you specify 2, writes unmatched
		   lines only from file 2.

		   If you omit the option, writes no output for unmatched lines.

       -e s	   Writes the string you specify in s to the output if you specify a nonexistent field in the list for the option.   For  example,
		   if lines in file 2 contain only three fields, and you specify 2.4 in list, writes s in place of the nonexistent field.

       -jn m	   Defines  field  m  in file n to be the join field. The command compares the field you specify in the option to the default join
		   field in the other file.  If you omit n, the command uses the mth field in both files.

       -1 m	   Use the m th field in the first file as the join field.  This option is equivalent to using m.

       -2 m	   Use the m field in the second file as the join field.  This option is equivalent to using m.

       -o list	   Output the joined data according to list.  The specifiers in list have the format file.field, where file is either 1 or  2  and
		   field is the number of the field.

       -tc	   Recognize the tab character c.  The presence of c in a line is significant, both for comparing join fields and creating output.

Restrictions
       If you specify the option, the command collates the same as with no options.

Examples
       Suppose that by issuing the following commands, you display the files shown in the example:
       % cat file_1
       apr     15
       aug     20
       dec     18
       feb     05
       % cat file_2
       apr     06
       aug     14
       date
       feb     15
       Both files are sorted in ascending order.

       If you issue the command without options, the output appears as follows:
       % join file_1 file_2
       apr 15 06
       aug 20 14
       feb 05 15
       The third line in each input file is not joined in the output because the join fields (date and dec) do not match.

       To  join  the  lines  in these files and format the output so that the second field from each file appears first and the first (join) field
       appears second, issue the following command:
       % join -o 1.2 1.1 2.2 2.1 file_1 file_2
       15 apr 06 apr
       20 aug 14 aug
       05 feb 15 feb
       To write lines that are unmatched to the output, issue the following command:
       % join -a file_1 file_2
       apr 15 06
       aug 20 14
       date
       dec 18
       feb 05 15

See Also
       awk(1), comm(1), sort(1), sort5(1), environ(5int)

																	   join(1)
All times are GMT -4. The time now is 03:48 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy