Sponsored Content
Top Forums Shell Programming and Scripting Search for specific file type in subdirectory with multiple folders Post 302981812 by RavinderSingh13 on Monday 19th of September 2016 11:40:01 PM
Old 09-20-2016
Quote:
Originally Posted by cmccabe
set -x showed that, while I am still not sure of the best way to accomplish this, the final vcf.gz that comes from the 001 folder is called variants.vcf.gz. The final vcf.gz that comes from the 002 folder is also called variants.vcf.gz. So unless the files are named differently somehow they are always going to be replaced. Thank you Smilie.
Hello cmccabe,

I am sorry, I am confused about your requirement. But by seeing your findcommand I could say you need to copy few files by finding them from one location to another and copy to detination directory, so you could try to change your command with following(not tested though).
Code:
find $a/$line -name "*vcf.gz" -exec cp -t $DEST {} \+

It will copy all matched files to destination directory. Please try it and do let us know how it goes then. If your requirement is different then please be more clear and specific in your requirements.

Thanks,
R. Singh

Last edited by RavinderSingh13; 09-20-2016 at 05:38 AM..
 

10 More Discussions You Might Find Interesting

1. UNIX for Dummies Questions & Answers

string search in folders with particular multiple file extension

Hi, I am newbie in UNIX so please excuse for my questions. Is there a a way to search for string in files within folder and sub folder in particluar file extensions. Ex. search for ABC in folder 'A'(including it's sub folders) in html, xml files. Thanks, Ani (2 Replies)
Discussion started by: anikanch
2 Replies

2. Shell Programming and Scripting

Search for multiple strings in specific position

Hi, I need to search for some strings in specific positions in a file. If the strings: "foo1", "foo2" or "foo3" is on position 266 or position 288 in a file i want the whole line printed. Any idea how to do it? (5 Replies)
Discussion started by: HugoH
5 Replies

3. Shell Programming and Scripting

Find files of specific size excluding search in a subdirectory

Hi All, I was exploring find command and came across -prune option which would exclude search in a mention subdirectory. My quesry is to search all files more that 100 MB size but exclude search in a subdirectory. I am using below command,but somehow it is not working. Can anybody help me... (6 Replies)
Discussion started by: usha rao
6 Replies

4. Shell Programming and Scripting

Find files of type within folder copy multiple results to different folders

Ok question number two: I'd like to search a directory for multiple file types (rar, txt, deb) and depending on what's found, copy those files to folders named Rar, TextFiles, and Debs. I'm looking for speed here so the faster the script the better. I want it to be a function that I pass 1 argument... (4 Replies)
Discussion started by: DC Slick
4 Replies

5. Shell Programming and Scripting

Search for file and size subdirectory as well

Hi I made this code to search in directory for file and size How can I remodel it to seach in the sub direcotry as well Thanks #!/bin/bash echo -n "Enter: " read var if then echo "Directory exists: ${var}" size=`du -hs "${var}"` echo The size of the current folder is... (4 Replies)
Discussion started by: lio123
4 Replies

6. Shell Programming and Scripting

Script to search specific folders dates /mm/dd/ structure

Hi, I have a script that handles a huge amount of log files from many machines and copies it into a SAN location with the following directory structure: /SAN/machinenames/yyyy/m/d so for example /SAN/hosta/2011/3/12/files* Now I am writing a bash script to search for files between to date... (4 Replies)
Discussion started by: GermanJulian
4 Replies

7. Shell Programming and Scripting

how to count how many subdirectory containing more than a certain number of specific file type

hi I want to write a script which count the number of subdirectories in the current root directory that contain more than a specified number of files of a specific type. Is there an easy way to do this? Thanks Robert (2 Replies)
Discussion started by: piynik
2 Replies

8. Shell Programming and Scripting

Gunzip,grep and zip across folders in a subdirectory

I have a simple function that greps within a folder into files that are already gunzipped. This was already written for me so from my understanding fn=$1 specifies that it will look into any file in that folder that is gunzipped and the rest of the script greps the data its looking for and puts it... (3 Replies)
Discussion started by: red56
3 Replies

9. Shell Programming and Scripting

Copying specific file types to specific folders

I am trying to write a script that cycles through a folder containing many folders and when inside each one it's supposed to copy all the .fna.gz files to a folder elsewhere if the file and the respective folder have the same name. for fldr in /home/playground/genomes/* ; do find .... (8 Replies)
Discussion started by: Mr_Keystrokes
8 Replies

10. UNIX for Beginners Questions & Answers

How to use a grep search to search for a specific string within multiple directories?

Lets say I have a massive directory which is filled with other directories all filled with different c++ scripts and I want a listing of all the scripts that contain the string: "this string". Is there a way to use a grep search for that? I tried: grep -lr "this string" * but I do not... (3 Replies)
Discussion started by: Circuits
3 Replies
ppmtosixel(1)                                                 General Commands Manual                                                ppmtosixel(1)

NAME
ppmtosixel - convert a portable pixmap into DEC sixel format SYNOPSIS
ppmtosixel [-raw] [-margin] [ppmfile] DESCRIPTION
Reads a portable pixmap as input. Produces sixel commands (SIX) as output. The output is formatted for color printing, e.g. for a DEC LJ250 color inkjet printer. If RGB values from the PPM file do not have maxval=100, the RGB values are rescaled. A printer control header and a color assignment table begin the SIX file. Image data is written in a compressed format by default. A printer control footer ends the image file. OPTIONS
-raw If specified, each pixel will be explicitly described in the image file. If -raw is not specified, output will default to com- pressed format in which identical adjacent pixels are replaced by "repeat pixel" commands. A raw file is often an order of magni- tude larger than a compressed file and prints much slower. -margin If -margin is not specified, the image will be start at the left margin (of the window, paper, or whatever). If -margin is speci- fied, a 1.5 inch left margin will offset the image. PRINTING
Generally, sixel files must reach the printer unfiltered. Use the lpr -x option or cat filename > /dev/tty0?. BUGS
Upon rescaling, truncation of the least significant bits of RGB values may result in poor color conversion. If the original PPM maxval was greater than 100, rescaling also reduces the image depth. While the actual RGB values from the ppm file are more or less retained, the color palette of the LJ250 may not match the colors on your screen. This seems to be a printer limitation. SEE ALSO
ppm(5) AUTHOR
Copyright (C) 1991 by Rick Vinci. 26 April 1991 ppmtosixel(1)
All times are GMT -4. The time now is 01:23 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy