Above code is not doing what you explained in your post.
You need to read line by line in out.txt file then find / list the files with *.bam extension , copy etc.
It may be done in oneliner , if you can add more description about structure of Folder1,Folder2 and /home/cmccabe/nfs/exportedReports with clear example.
if not, try like this:
Sample code written here to update your script.
Last edited by greet_sed; 09-16-2016 at 01:56 PM..
Reason: Add sample code
Hi Friends,
Below is my requirement and i am not clear how to approach this issue in unix programming.
I have a folder with 2500 files. The files are in below format.
1234_name1.txt
1234_name123.txt
4567_name1.txt
4567_name123.txt
and i need a program which will read each file from this... (5 Replies)
I'm having problems with my bash script. I would like to find a file matching today's date in the filename, i.e. my_file_20120902.txt and then move it to a different directory, i.e. /tmp. Thanks. (1 Reply)
Hi friends,
I have one XML file having below structure :-
INput XML file :-
<?xml version="1.0" encoding="UTF-8"?>
<START>
<A=value1>
<attr name1="a1">
</A>
<B=value2>
<attr name2="b1">
<attr name3="c1">
</B>
</START>
output xml file should be
=== (3 Replies)
I am trying to download all files from a user authentication, password protected https site, with a particular extension (.bam). The files are ~20GB each and I am not sure if the below is the best way to do it. I am also not sure how to direct the downloaded files to a folder as well as external... (7 Replies)
I am trying to move specific folders and subfolders within a directory using the below. I can see the folders to move and they are at the location, but I am getting an error. Thank you :).
mv -v /home/cmccabe/Desktop/NGS/API/6-10-2016{bam/{validation,coverage},bedtools /media/cmccabe/"My... (6 Replies)
Dear Experts
my scenario is as follows...
I have one source folder "Source" and 2 target folders "Target_123456" & "Target_789101". I have 2 series of files. 123456 series and 789101 series. Each series has got 3 types of fiels "Debit", "Refund", "Claims".
All files are getting... (17 Replies)
Hello all,
do you know any way i can i move folders and its content if folder is older than 1,5 days in bash?
I tried:
find /home/xyz/DATA/* -type d -ctime +1.5 -exec mv "{}" /home/xyz/move_data_here/ \;All i got was that Files from DATA /home/xyz/DATA/* ended messed up in... (1 Reply)
Hi Team,
I am new to the linux commands and I really need help . I would be really thankful if I can get some inputs.
I have below folders in the path "/home/temp"
20170428
20170427
20170429
changes
tempI need to get the files generated in the last 15 mins in all the above folders... (4 Replies)
I am trying to mv each of the .vcf files in the variants folder to the folder in /home/cmccabe/f2 that the .vcf id is found in file. $2 in file will always have the id of a .vcf in the variants folder. The line in blue staring with R_2019 in file up to the -v5.6 will always be an exact match to a... (4 Replies)
Discussion started by: cmccabe
4 Replies
LEARN ABOUT DEBIAN
xml::generator::dom
DOM(3pm) User Contributed Perl Documentation DOM(3pm)NAME
XML::Generator::DOM - XML::Generator subclass for producing DOM trees instead of strings.
SYNOPSIS
use XML::Generator::DOM;
my $dg = XML::Generator::DOM->new();
my $doc = $dg->xml($dg->xmlcmnt("Test document."),
$dg->foo({'baz' => 'bam'}, 42));
print $doc->toString;
yields:
<?xml version="1.0" standalone="yes"?>
<!--Test document-->
<foo baz="bam">42</foo>
DESCRIPTION
XML::Generator::DOM subclasses XML::Generator in order to produce DOM trees instead of strings (see XML::Generator and XML::DOM). This
module is still experimental and its semantics might change.
Essentially, tag methods return XML::DOM::DocumentFragment objects, constructed either from a DOM document passed into the constructor or a
default document that XML::Generator::DOM will automatically construct.
Calling the xml() method will return this automatically constructed document and cause a fresh one to be constructed for future tag method
calls. If you passed in your own document, you may not call the xml() method.
Below, we just note the remaining differences in semantics between XML::Generator methods and XML::Generator::DOM methods.
CONSTRUCTOR
These configuration options are accepted but have no effect on the semantics of the returned object: escape, pretty, conformance and empty.
TAG METHODS
Subsequently, tag method semantics are somewhat different for this module compared to XML::Generator. The primary difference is that tag
method return XML::DOM::DocumentFragment objects. Namespace and attribute processing remains the same, but remaining arguments to tag
methods must either be text or other XML::DOM::DocumentFragment objects. No escape processing, syntax checking, or output control is done;
this is all left up to XML::DOM.
SPECIAL TAGS
All special tags are available by default with XML::Generator::DOM; you don't need to use 'conformance' => 'strict'.
xmlpi(@args)
Arguments will simply be concatenated and passed as the data to the XML::DOM::ProcessingInstruction object that is returned.
xmlcmnt
Escaping of '--' is done by XML::DOM::Comment, which replaces both hyphens with '-'. An XML::DOM::Comment object is returned.
xmldecl
Returns an XML::DOM::XMLDecl object. Respects 'version', 'encoding' and 'dtd' settings in the object.
xmldecl
Returns an XML::DOM::DocumentType object.
xmlcdata
Returns an XML::DOM::CDATASection object.
xml
As described above, xml() can only be used when dom_document was not set in the object. The automatically created document will have its
XML Declaration set and the arguments to xml() will be appended to it. Then a new DOM document is automatically generated and the old one
is returned. This is the only way to get a DOM document from this module.
perl v5.12.4 2004-03-23 DOM(3pm)