Above code is not doing what you explained in your post.
You need to read line by line in out.txt file then find / list the files with *.bam extension , copy etc.
It may be done in oneliner , if you can add more description about structure of Folder1,Folder2 and /home/cmccabe/nfs/exportedReports with clear example.
if not, try like this:
Sample code written here to update your script.
Last edited by greet_sed; 09-16-2016 at 01:56 PM..
Reason: Add sample code
Hi Friends,
Below is my requirement and i am not clear how to approach this issue in unix programming.
I have a folder with 2500 files. The files are in below format.
1234_name1.txt
1234_name123.txt
4567_name1.txt
4567_name123.txt
and i need a program which will read each file from this... (5 Replies)
I'm having problems with my bash script. I would like to find a file matching today's date in the filename, i.e. my_file_20120902.txt and then move it to a different directory, i.e. /tmp. Thanks. (1 Reply)
Hi friends,
I have one XML file having below structure :-
INput XML file :-
<?xml version="1.0" encoding="UTF-8"?>
<START>
<A=value1>
<attr name1="a1">
</A>
<B=value2>
<attr name2="b1">
<attr name3="c1">
</B>
</START>
output xml file should be
=== (3 Replies)
I am trying to download all files from a user authentication, password protected https site, with a particular extension (.bam). The files are ~20GB each and I am not sure if the below is the best way to do it. I am also not sure how to direct the downloaded files to a folder as well as external... (7 Replies)
I am trying to move specific folders and subfolders within a directory using the below. I can see the folders to move and they are at the location, but I am getting an error. Thank you :).
mv -v /home/cmccabe/Desktop/NGS/API/6-10-2016{bam/{validation,coverage},bedtools /media/cmccabe/"My... (6 Replies)
Dear Experts
my scenario is as follows...
I have one source folder "Source" and 2 target folders "Target_123456" & "Target_789101". I have 2 series of files. 123456 series and 789101 series. Each series has got 3 types of fiels "Debit", "Refund", "Claims".
All files are getting... (17 Replies)
Hello all,
do you know any way i can i move folders and its content if folder is older than 1,5 days in bash?
I tried:
find /home/xyz/DATA/* -type d -ctime +1.5 -exec mv "{}" /home/xyz/move_data_here/ \;All i got was that Files from DATA /home/xyz/DATA/* ended messed up in... (1 Reply)
Hi Team,
I am new to the linux commands and I really need help . I would be really thankful if I can get some inputs.
I have below folders in the path "/home/temp"
20170428
20170427
20170429
changes
tempI need to get the files generated in the last 15 mins in all the above folders... (4 Replies)
I am trying to mv each of the .vcf files in the variants folder to the folder in /home/cmccabe/f2 that the .vcf id is found in file. $2 in file will always have the id of a .vcf in the variants folder. The line in blue staring with R_2019 in file up to the -v5.6 will always be an exact match to a... (4 Replies)
Discussion started by: cmccabe
4 Replies
LEARN ABOUT DEBIAN
libbash
LIBBASH(7) libbash Manual LIBBASH(7)NAME
libbash -- A bash shared libraries package.
DESCRIPTION
libbash is a package that enables bash dynamic-like shared libraries. Actually its a tool for managing bash scripts whose functions you may
want to load and use in scripts of your own.
It contains a 'dynamic loader' for the shared libraries ( ldbash(1)), a configuration tool (ldbashconfig(8)), and some libraries.
Using ldbash(1) you are able to load loadable bash libraries, such as getopts(1) and hashstash(1). A bash shared library that can be loaded
using
ldbash(1) must answer 4 requirments:
1. It must be installed in $LIBBASH_PREFIX/lib/bash (default is /usr/lib/bash).
2. It must contain a line that begins with '#EXPORT='. That line will contain (after the '=') a list of functions that the library
exports. I.e. all the function that will be usable after loading that library will be listed in that line.
3. It must contain a line that begins with '#REQUIRE='. That line will contain (after the '=') a list of bash libraries that are
required for our library. I.e. every bash library that is in use in our bash library must be listed there.
4. The library must be listed (For more information, see ldbashconfig(8)).
Basic guidelines for writing library of your own:
1. Be aware, that your library will be actually sourced. So, basically, it should contain (i.e define) only functions.
2. Try to declare all variables intended for internal use as local.
3. Global variables and functions that are intended for internal use (i.e are not defined in '#EXPORT=') should begin with:
__<library_name>_
For example, internal function myfoosort of hashstash library should be named as
__hashstash_myfoosort
This helps to avoid conflicts in global name space when using libraries that come from different vendors.
4. See html manual for full version of this guide.
AUTHORS
Hai Zaar <haizaar@haizaar.com>
Gil Ran <ril@ran4.net>
SEE ALSO ldbash(1), ldbashconfig(8), getopts(1), hashstash(1)colors(1)messages(1)urlcoding(1)locks(1)Linux Epoch Linux