Bash to move specific files from folders in find file
I have a directory /home/cmccabe/nfs/exportedReports that contains multiple folders in it. The find writes the name of each folder to out.txt. A new directory is then created in a new location /home/cmccabe/Desktop/NGS/API, named with the date. What I am trying to do, unsuccessfully at the moment, is copy each specific file type .bam from each folder in out.txt to the new date folder in /home/cmccabe/Desktop/NGS/API/$DATE.
For example, after the find command out.txt:
within each of those folders there are 3 .bam files to move to the new directory/home/cmccabe/Desktop/NGS/API/$DATE. Thank you .
Hi Friends,
Below is my requirement and i am not clear how to approach this issue in unix programming.
I have a folder with 2500 files. The files are in below format.
1234_name1.txt
1234_name123.txt
4567_name1.txt
4567_name123.txt
and i need a program which will read each file from this... (5 Replies)
I'm having problems with my bash script. I would like to find a file matching today's date in the filename, i.e. my_file_20120902.txt and then move it to a different directory, i.e. /tmp. Thanks. (1 Reply)
Hi friends,
I have one XML file having below structure :-
INput XML file :-
<?xml version="1.0" encoding="UTF-8"?>
<START>
<A=value1>
<attr name1="a1">
</A>
<B=value2>
<attr name2="b1">
<attr name3="c1">
</B>
</START>
output xml file should be
=== (3 Replies)
I am trying to download all files from a user authentication, password protected https site, with a particular extension (.bam). The files are ~20GB each and I am not sure if the below is the best way to do it. I am also not sure how to direct the downloaded files to a folder as well as external... (7 Replies)
I am trying to move specific folders and subfolders within a directory using the below. I can see the folders to move and they are at the location, but I am getting an error. Thank you :).
mv -v /home/cmccabe/Desktop/NGS/API/6-10-2016{bam/{validation,coverage},bedtools /media/cmccabe/"My... (6 Replies)
Dear Experts
my scenario is as follows...
I have one source folder "Source" and 2 target folders "Target_123456" & "Target_789101". I have 2 series of files. 123456 series and 789101 series. Each series has got 3 types of fiels "Debit", "Refund", "Claims".
All files are getting... (17 Replies)
Hello all,
do you know any way i can i move folders and its content if folder is older than 1,5 days in bash?
I tried:
find /home/xyz/DATA/* -type d -ctime +1.5 -exec mv "{}" /home/xyz/move_data_here/ \;All i got was that Files from DATA /home/xyz/DATA/* ended messed up in... (1 Reply)
Hi Team,
I am new to the linux commands and I really need help . I would be really thankful if I can get some inputs.
I have below folders in the path "/home/temp"
20170428
20170427
20170429
changes
tempI need to get the files generated in the last 15 mins in all the above folders... (4 Replies)
I am trying to mv each of the .vcf files in the variants folder to the folder in /home/cmccabe/f2 that the .vcf id is found in file. $2 in file will always have the id of a .vcf in the variants folder. The line in blue staring with R_2019 in file up to the -v5.6 will always be an exact match to a... (4 Replies)
Discussion started by: cmccabe
4 Replies
LEARN ABOUT OSF1
refile
refile(1) General Commands Manual refile(1)NAME
refile - file message in other folders (only available within the message handling system, mh)
SYNOPSIS
refile [msgs] [+folder] [options]
OPTIONS
Refiles the draft message, or the current message in your +drafts folder, if you have one set up. You cannot give a msgs argument when you
use this option. Moves a file into a folder. This option takes a file from its directory and places it in the named folder, as the next
message in the folder. The file must be formatted as a legal mail message. This means that the message must have the minimum header fields
separated from the body of the message by a blank line or a line of dashes. Prints a list of the valid options to this command. Keeps a
copy of the message in the source folder. Normally, refile removes the messages from the original folder when it refiles them. The -link
option keeps a copy in the original folder, as well as filing a copy in the new folder. Preserves the number of a message in the new
folder. Normally, when a message is refiled in to another folder, it is set to the next available number in that folder. The -preserve
option keeps the number of the message the same in the new folder as it had been in the old.
You cannot have two messages with the same number in one folder, so you should use this option with care. Specifies the source
folder to take messages from. Normally, messages are refiled from the current folder into another folder. However, you can take mes-
sages from a different folder by using the -src +folder option to specify the alternative source folder.
DESCRIPTION
Use the refile command to move the specified message from the current folder to another folder. You can refile messages in more than one
folder by giving multiple folder names as arguments.
If you do not specify a message, the current message is refiled. You can refile a message other than the current message by giving its num-
ber as a msgs argument. You can also refile more than one message at a time by specifying more than one message number, or a range of mes-
sage numbers, or a message sequence. See mark(1) for more information on sequences.
The current folder remains the same unless the -src option is specified; in that case, the source folder becomes current. Normally, the
last message specified becomes the current message. However, if the -link option is used, the current message is not changed.
If the Previous-Sequence: entry is set in the file, in addition to defining the named sequences from the source folder, refile will also
define those sequences for the destination folders. See mh_profile(4) for information concerning the previous sequence.
PROFILE COMPONENTS
Path: To determine your Mail directory
Folder-Protect: To set protections when creating a new folder
rmmproc: Program to delete the message
EXAMPLES
The following example refiles messages 3 and 5 in the folder +records: % refile 3 5 +records The next example files the current message
into two folders: % refile +jones +map The next example takes message 13 in the current folder and refiles it in the +test folder. The mes-
sage remains in the current folder as well as appearing in the +test folder. % refile -link 13 +test The next example takes a message from
the folder +test when it is not the current folder, and places it in the folder +outbox: % refile 3 -src +test +outbox
FILES
The user profile.
SEE ALSO folder(1), mark(1), mh_profile(4)refile(1)