It doesn't look like the .[ is important as long as all the +/- get removed if they meet the condition, but $7 could be intronic or UTR5 or UTR3, is this possible to include in one awk?
@Shamrock the exonic will be used in another awk, but I'm not quite sure of the details yet. Thank you .
Maybe
Last edited by cmccabe; 08-25-2016 at 06:03 PM..
Reason: added details and awk
Folks;
I'm trying to write a script to scan through a directory tree then for each file it finds, it run a command line tool, then if the results include the word "DONE", it removes the file.
In more details;
i have a Linux directory tree such as "/opt/grid/1022/store"
I'm trying to write a... (6 Replies)
Hi folks,
I have a text file that I need to parse, and I cant figure it out. The source is a report breaking down softwares from various companies with some basic info about them (see source snippet below). Ultimately what I want is an excel sheet with only Adobe and Microsoft software name and... (5 Replies)
Hi,
I need to remove some lines from an XML file is the value within a tag is empty.
Imagine this scenario,
<acd><acdID>2</acdID><logon></logon></acd>
<acd><acdID></acdID><logon></logon></acd>
<acd><acdID></acdID><logon></logon></acd>
<acd><acdID></acdID><logon></logon></acd>
I... (3 Replies)
Hi ,
I'm a newbie.Never worked on Unix before. I want a shell script to perform the following:
I want to extract strings from each line ,based on the type of line(Nameline,Subline) and output it to another file.Below is a sample format.
2010-12-21 14:00"1"Nameline"Midterm"First Name:Jane ... (4 Replies)
Hi
Ive been scratching over this for some time with no solution.
I have a file like this
1 bla bla 1
2 bla bla 2
4 bla bla 3
5 bla bla 1
6 bla bla 1
I want to remove consecutive occurrences of lines like bla bla 1, but the first column may be different.
Any ideasss?? (23 Replies)
Hi
I have some data in a file as below
******************************
Class 1A
Students absent are :
1. ABC
2. CDE
3. CPE
******************************
Class 2A
Students absent are :
******************************
Class 3A
Students absent are : (6 Replies)
Hi,
I have a file like below.
1,2,3,4,5,6,7,8,9I would like to print or copied to a file based of line count in perl
If I gave a condition 1 to 3 then it should iterate over above file and print 1 to 3 and then again 1 to 3 etc.
output should be
1,2,3
4,5,6
7,8,9 (10 Replies)
The awk below uses the tab-delimeted fileand reformats each line based on one of three conditions (rules). The 3 rules are for deletion (lines in blue), snv (line in red), and insertion (lines in green). I have included all possible combinations of lines from my actual data, which is very large.... (0 Replies)
In the awk below I am trying to add a | that will adjust $2 in the ouput by adding +1 if the original value from file that was used in $3 had a - in it. Line 3 of file is an example of this. In my current awk I just subtract one but I am not sure how to only apply this to those values without a -.... (5 Replies)