SBATCH trinity for multiple files and rename/move the output files
Hey guys,
I have wrote the following script to apply a module named "trinity" on my files. (it takes two input files and spit a trinity.fasta as output)
Now I cannot figure out how to modify this to take multiple files (2 inputs in each iteration) and then rename the output file (which is "trinity.fasta") and move it to another folder so it won't be overwritten every time.
all my files are like this:
and obviously the desired outputs:
Thanks in advance!
1. If I have a file-yyyymmdd.dat in a directory DATA1, then how do I move this file to directory DATA2 and the file name change to file-yyyymmdd.dat.currenttime
I can manual do this
$mv fileA-yyyymmdd.dat ./DATA2/fileA-yyyymmdd.dat.`date +%Y%m%d%H%M%S`
but how do I move all of the files in... (1 Reply)
Using a bash script, I need to find all files in a folder "except" the newest file. Then I need to insert the contents of one text file into all the files found. This text needs to be placed at the beginning of each file and needs a blank line between it and the current contents of the file. Then I... (5 Replies)
I am connecting to a remote server (Unix) and doing a ftp dowmload of files. The script (VB script) works fine except for not being able to move the downloaded files on the remote server to another folder.
I need to move all files with an .asc extesnion from folder "tovecellio_edi" to folder... (1 Reply)
Variations of multiple renames seems to come up a lot but i can't find the answer to this situation.
Tidying up a directory where people rename files to .working, .bob, .attempt1 & so on.
what i am trying to do is: list the file type, & rename from ".whatever" to .fixed.
As the ".whatever" is... (5 Replies)
Hello,
I'm new in the forum and in UNIX scripting, what I need is to write a simple batch script that renames or move the files back & forth from one directory to another, and then schedule the script to run on the server when the scheduled down time is, which is on Thursdays at 8pm and during... (5 Replies)
Hi,
I need to do something easy but I can't seem to figure out how to do this.
Let's say I have 6 files in the directory below:
/ebsbeta_f/flash/EBSUATQB/onlinelog
o1_mf_6_55klt7nr_.log
o1_mf_3_55klskj4_.log
o1_mf_4_55klsrl1_.log
o1_mf_5_55klt09p_.log
o1_mf_2_55klv1ts_.log... (10 Replies)
I have a directory e2e_ms_xfer/cent01
this contains the multiple files some of which will be named below with unique date time stamps
e2e_ms_edd_nom_CCYYMMDD_HHMM.csv
What I want to do is in a loop
1) Get the oldest file
2) Rename
3) Move it up one level from e2e_ms_xfer/cent01 to... (1 Reply)
Hi all,
I have a many folders with zipped files in them. The zipped files are txt files from different folders. The txt files have the same names. If i try to
find . -type f -name "*.zip" -exec cp -R {} /myhome/ZIP \; it fails since the ZIP files from different folders have the same names and... (2 Replies)
I'm using cygwin32 on Windows.
DN is an environment variable pointed at my download directory.
This command works to move the single most recent file in my download directory to my current directory:
mv "`perl -e '$p = $ARGV; opendir $h, $p or die "cannot opendir $p: $!"; @f = sort { -M $a... (2 Replies)
I want to rename (move) multiple files on remote server. I tried the following command to move all TXT files from my_dir directory to /new_dir. But it does not work. Any help?
#!/bin/ksh
sftp -dev3 << ABC
cd my_dir
$(for i in TXT; do echo "ls *.$i" ; rename $x /new_dir/$x;... (1 Reply)
Discussion started by: Soham
1 Replies
LEARN ABOUT CENTOS
vfs_crossrename
VFS_CROSSRENAME(8) System Administration tools VFS_CROSSRENAME(8)NAME
vfs_crossrename - server side rename files across filesystem boundaries
SYNOPSIS
vfs objects = crossrename
DESCRIPTION
This VFS module is part of the samba(7) suite.
The vfs_crossrename VFS module allows server side rename operations even if source and target are on different physical devices. A "move"
in Explorer is usually a rename operation if it is inside of a single share or device. Usually such a rename operation returns
NT_STATUS_NOT_SAME_DEVICE and the client has to move the file by manual copy and delete operations. If the rename by copy is done by the
server this can be much more efficient. vfs_crossrename tries to do this server-side cross-device rename operation.
There are however limitations that this module currently does not solve:
The ACLs of files are not preserved,
meta data in EAs are not preserved,
renames of whole subdirectories cannot be done recursively, in that case we still return STATUS_NOT_SAME_DEVICE and let the client
decide what to do,
rename operations of huge files can cause hangs on the client because clients expect a rename operation to return fast.
This module is stackable.
OPTIONS
crossrename:sizelimit = BYTES
server-side cross-device-renames are only done for files if the filesize is not larger than the defined size in MiB to prevent
timeouts. The default sizelimit is 20 (MiB)
EXAMPLES
To add server-side cross-device renames inside of a share for all files sized up to 50MB:
[testshare]
path = /data/mounts
vfs objects = crossrename
crossrename:sizelimit = 50
VERSION
This man page is correct for version 4.0.0 of the Samba suite.
AUTHOR
The original Samba software and related utilities were created by Andrew Tridgell. Samba is now developed by the Samba Team as an Open
Source project similar to the way the Linux kernel is developed.
Samba 4.0 06/17/2014 VFS_CROSSRENAME(8)