08-17-2016
This for a unix bash script.
When there is a match between a pair of letters AND corresponding counts between the two files (if "CC" is 3 in file1 and "CC" is also 3 in file2) then I would like this to then move particular files from one directory into another directory (it's not so much this part of the syntax I'm concerned with though, more how to do the actual comparison).
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I have two files with same name residing in different directory. Each file has 14 columns. I want to compare column by column for each row.
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:(
Hello,
Having a problem with reading two files using awk/nawk, am new to both them.
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--------------------------------
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3,a125,266.93,10/9/07 16.48
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<file 2>
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Hi,
I'm a newbie to scripting and am trying to compare two files using awk.
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eg:
file1:
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Hello, i am new in Bash. Actually i have a directory : /home/resultfiles and inside i have these txt files:
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Judi # cat File1
judi /export/home 76
judi /usr 83
judi #
judi # cat File2
judi /export/home 79
judi /usr 82
judi #
if COLUMN3 of File2 is greater that COLUMN3 of File1, then print File2's lines
juid /export/home 79
Code tags please (2 Replies)
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LEARN ABOUT DEBIAN
vcf-compare
VCF-COMPARE(1) User Commands VCF-COMPARE(1)
NAME
vcf-compare - compare bgzipped and tabix indexed VCF files
SYNOPSIS
compare-vcf [OPTIONS] file1.vcf file2.vcf ...
DESCRIPTION
About: Compare bgzipped and tabix indexed VCF files. (E.g. bgzip file.vcf; tabix -p vcf file.vcf.gz)
OPTIONS
-c, --chromosomes <list|file>
Same as -r, left for backward compatibility. Please do not use as it will be dropped in the future.
-d, --debug
Debugging information. Giving the option multiple times increases verbosity
-H, --cmp-haplotypes
Compare haplotypes, not only positions
-m, --name-mapping <list|file>
Use with -H when comparing files with differing column names. The argument to this options is a comma-separated list or one mapping
per line in a file. The names are colon separated and must appear in the same order as the files on the command line.
-R, --refseq <file>
Compare the actual sequence, not just positions. Use with -w to compare indels.
-r, --regions <list|file>
Process the given regions (comma-separated list or one region per line in a file).
-s, --samples <list>
Process only the listed samples. Excluding unwanted samples may increase performance considerably.
-w, --win <int>
In repetitive sequences, the same indel can be called at different positions. Consider records this far apart as matching (be it a
SNP or an indel).
-h, -?, --help
This help message.
vcf-compare 0.1.5 July 2011 VCF-COMPARE(1)