Chr Start End Ref Alt Func.refGene AAChange.refGene PopFreqMax CLINSIG Classification
The code ran with no error before I added $7 and I also used the below awk to see what NF equals, but am not able to correct the error:
Code:
awk 'NR==1{for(i=1;i<=NF;i++){print "Number of field in terms of NF is--> NF-" NF-i", value is-->" $i}}' file.txt
Number of field in terms of NF is--> NF-9, value is-->Chr
Number of field in terms of NF is--> NF-8, value is-->Start
Number of field in terms of NF is--> NF-7, value is-->End
Number of field in terms of NF is--> NF-6, value is-->Ref
Number of field in terms of NF is--> NF-5, value is-->Alt
Number of field in terms of NF is--> NF-4, value is-->Func.refGene
Number of field in terms of NF is--> NF-3, value is-->AAChange.refGene
Number of field in terms of NF is--> NF-2, value is-->PopFreqMax
Number of field in terms of NF is--> NF-1, value is-->CLINSIG
Number of field in terms of NF is--> NF-0, value is-->Classification
Thank you especially @RavinderSingh13
Hello cmccabe,
Glad that solution helped you. As Don mentioned here before too, there must be an empty line in your Input_file because it is saying FNR==8 so on 8th line it is trying to get value of $(NF-1) which is failing because there is NULL value of NF so it is complaining that attempting to access field -1. As usual please show complete Input_file with expected Output and all the requirements.
Thanks,
R. Singh
This User Gave Thanks to RavinderSingh13 For This Post:
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