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Top Forums Shell Programming and Scripting Help with merge data with a reference sequence Post 302978381 by Scrutinizer on Friday 29th of July 2016 12:53:58 PM
Old 07-29-2016
Can the sequences in your FASTA file be spread over multiple lines?
 

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srec_spasm(5)							File Formats Manual						     srec_spasm(5)

NAME
srec_spasm - SPASM file format DESCRIPTION
This format is the output of the Paralax SPASM assembler (now defunct, I'm told). The file contains two columns of 16-bit hexadecimal coded values. The first column is the word address, the second column is the word data. By default, SRecord treats this is big-endian data (the most significant byte first). If you want little endian order, use the -spasm-le argument instead. Size Multiplier In general, binary data will expand in sized by approximately 5.0 times when represented with this format (5.5 times in Windows). EXAMPLE
Here is an example SPASM file. It contains the data "Hello, World[rq] to be loaded at bytes address 0x0100 (but remember, the file con- tents are word addressed). 0080 6548 0081 6C6C 0082 2C6F 0083 5720 0084 726F 0085 646C COPYRIGHT
srec_cat version 1.58 Copyright (C) 1998, 1999, 2000, 2001, 2002, 2003, 2004, 2005, 2006, 2007, 2008, 2009, 2010, 2011 Peter Miller The srec_cat program comes with ABSOLUTELY NO WARRANTY; for details use the 'srec_cat -VERSion License' command. This is free software and you are welcome to redistribute it under certain conditions; for details use the 'srec_cat -VERSion License' command. AUTHOR
Peter Miller E-Mail: pmiller@opensource.org.au //* WWW: http://miller.emu.id.au/pmiller/ Reference Manual SRecord srec_spasm(5)
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