In the bash below the user selects the file to be used. The digits of each file are unique and used to automatically locate the next file to be used in the process. The problem I can not seem to fix is that the full path needs to be referenced in the second portion and it is not currently. Is there a better way? Thank you .
select1 files (user selects 123_base_counts.txt)
files used that match digits in file
These are all files in the directory:
Bash
Currently
Last edited by cmccabe; 07-25-2016 at 06:41 PM..
Reason: added current output
Write a quick shell snippet to find all of the IPV4 IP addresses
in any and all of the files under /var/lib/output/*, ignoring
whatever else may be in those files. Perform a reverse lookup on
each, and format the output neatly, like "IP=192.168.0.1,
... (0 Replies)
I have a file with hundreds of records and I need to find those records that have three digits at the beginning and the same three digits at the end.
$GREP '\(\)\(\)\(\)\3\2\1'I
believe this is part of the script but I am not sure how to compare these 3 digits with the 3 digits at the end of... (2 Replies)
Hi there, im sure this is really simple but i have some strings like this
e1000g123001
e1000g0
nge11101
nge3and i want to create two variables ($DRIVER and $INSTANCE). the first one containing the alpha characters that make up the first part of the string, e.g. e1000g or nge and the... (9 Replies)
Hi. I need assistance with the replacing of text into a specific file via a bash script.
My bash script, once run, currently provides a menu of computer names to choose.The script copies onto my system various files, depending what computer was selected in the menu.This is working OK.
Now, I... (1 Reply)
Hi I have a problem, I am attempting to write a bash script that goes through a file and can determine how many characters are at a set point in a line starting with QTY+113:100:PCE, If it detects 3 digits (number in bold) then pad it out with 12 zero's
If there are only two digits then pad it... (8 Replies)
In the below portion of a bash script the user selects a file from a directory.
select file in $(cd /home/cmccabe/Desktop/NGS/API/5-14-2016/bedtools;ls);do break;done
files in directory
123_base_counts.txt
456_base_counts.txt
789_base_counts.txt
second portion of bash currently (user... (4 Replies)
As part of a bash the below line strips off a numerical prefix from directory 1 to search for in directory 2.
for file in /home/cmccabe/Desktop/comparison/missing/*.txt
do
file1=${file##*/} # Strip off directory
getprefix=${file1%%_*.txt}
... (5 Replies)
The bash bash below extracts the oldest folder from a directory and stores it in filename
That result will match a line in bold in input. In the matching line there is an_xxx digit in italics that
(once the leading zero is removed) will match a line in link. That is the lint to print in output.... (2 Replies)
Hey everyone,
I am trying to extract column values from a column in a tab-delimited text file and overlay them in a 2nd tab-delimited text file using a V-lookup type script in Unix bash.
These are the 1st few rows of the 1st input file IN1:
rsid chromosome position allele1 ... (10 Replies)