Sponsored Content
Top Forums Shell Programming and Scripting awk to combine matches and use a field to adjust coordinates in other fields Post 302977715 by cmccabe on Thursday 21st of July 2016 10:37:04 AM
Old 07-21-2016
Thank you very much for your help and explanations, I really appreciate it Smilie
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

awk to sum specific field when pattern matches

Trying to sum field #6 when field #2 matches string as follows: Input data: 2010-09-18-20.24.44.206117 UOWEXEC db2bp DB2XYZ hostname 1 2010-09-18-20.24.44.206117 UOWWAIT db2bp DB2XYZ hostname ... (3 Replies)
Discussion started by: ux4me
3 Replies

2. Shell Programming and Scripting

How to print 1st field and last 2 fields together and the rest of the fields after it using awk?

Hi experts, I need to print the first field first then last two fields should come next and then i need to print rest of the fields. Input : a1,abc,jsd,fhf,fkk,b1,b2 a2,acb,dfg,ghj,b3,c4 a3,djf,wdjg,fkg,dff,ggk,d4,d5 Expected output: a1,b1,b2,abc,jsd,fhf,fkk... (6 Replies)
Discussion started by: 100bees
6 Replies

3. Shell Programming and Scripting

awk to match keyword and return matches and unique fields

Trying to use awk to find a keyword and return the matches in the row, but also $1 and $2, which are the unique id's, but they only appear once. Thank you :). file name 31 Index Chromosomal Position Gene Inheritance 122 2106725 TSC2 AD 124 2115481 TSC2 AD 121 2105400 TSC2 AD... (6 Replies)
Discussion started by: cmccabe
6 Replies

4. Shell Programming and Scripting

awk to combine by field and average by another

In the below awk I am trying to combine all matching $4 into a single $5 (up to the -), and count the lines in $6 and average all values in $7. The awk is close but it seems to only be using the last line in the file and skipping all others. The posted input is a sample of the file that is over... (3 Replies)
Discussion started by: cmccabe
3 Replies

5. Shell Programming and Scripting

awk to combine all matching fields in input but only print line with largest value in specific field

In the below I am trying to use awk to match all the $13 values in input, which is tab-delimited, that are in $1 of gene which is just a single column of text. However only the line with the greatest $9 value in input needs to be printed. So in the example below all the MECP2 and LTBP1... (0 Replies)
Discussion started by: cmccabe
0 Replies

6. Shell Programming and Scripting

awk to adjust coordinates in field based on sequential numbers in another field

I am trying to output a tab-delimited result that uses the data from a tab-delimited file to combine and subtract specific lines. If $4 matches in each line then the first matching sequential $6 value is added to $2, unless the value is 1, then the original $2 is used (like in the case of line... (3 Replies)
Discussion started by: cmccabe
3 Replies

7. Shell Programming and Scripting

awk to format file and combine two fields using comma

I am trying to use awk to format the file below, which is tab-delimited. The desired out is space delimited and is in the order of $9 $13 $2 $10-$11.$10 and $11 are often times multiple values separated by a comma, so the value in $10 is combined with the first value from $11 using the comma.... (5 Replies)
Discussion started by: cmccabe
5 Replies

8. Shell Programming and Scripting

awk to adjust text and count based on value in field

The below awk executes as is and produces the current output. It isvery close but what Ican not seem to do is add the -exon..., the ... portion comes from $1 and the _exon is static and will never change. If there is + sign in $4 then the ... is in acending order or sequential. If there is a - in... (2 Replies)
Discussion started by: cmccabe
2 Replies

9. UNIX for Beginners Questions & Answers

find pattern matches in consecutive lines in certain fields-awk

I have a text file with many thousands of lines, a small sample of which looks like this: InputFile:PS002,003 D -1 5 -1 -1 -1 -1 -1 -1 -1 -1 -1 -1 6 6 -1 -1 -1 -1 0 509 0 PS002,003 PSQ 0 1 7 18 1 0 -1 1 1 3 -1 -1 ... (5 Replies)
Discussion started by: jvoot
5 Replies

10. Shell Programming and Scripting

Perl to adjust coordinates based on repeat string

In the file below I am trying to count the given repeats of A,T,C,G in each string of letters. Each sequence is below the > and it is possible for a string of repeats to wrap from the line above. For example, in the first line the last letter is a T and the next lines has 3 more. I think the below... (10 Replies)
Discussion started by: cmccabe
10 Replies
TIGEXP(8)						      Administrator Commands							 TIGEXP(8)

NAME
tigexp - UNIX Security Checker Explanation Generator SYNOPSIS
tigexp msgid [msgid[msgid...]] tigexp [-f|-F] [security_report] DESCRIPTION
Tigexp is used to generate explanations of the output from the Tiger security checking package. In the first form, tigexp will generate an explanation of each of the message ids listed. In the second form, the security report specified will be scanned and explanations gener- ated. The -f option will generate one explanation for each unique message id in the security report, whereas the -F option will output the security report with explanations inserted after each entry in the report. There are five different message levels produced by Tiger. Each of the message levels is the last letter of the message id. The levels are: ALERT A message of this level indicates that Tiger has detected a possible intrusion attempt or troublesome misconfiguration which can expose the whole system to attacks. FAIL Messages of this level indicate a violation of a generic security policy or a possible intrusion. Appropriate action should be taken to fix this security issue. WARN Messages of this level indicate a security issue which should be checked further and might indicate a probable vulnerability or exposure. Most Tiger messages appear in this category. INFO These includes information messages which are not necessarily a security violation but might be useful for the administrator. Note that the tigerrc configuration file through the Tiger_Show_INFO_Msgs option determines whether or not Tiger shows these items. The default behaviour is to not show them. ERROR These messages are errors in the execution of Tiger (or any of its scripts), this is probably due to a misconfiguration in the pro- gram, because of a problem in the installation or because a file needed for the test is missing. The script who outputs this error should be investigated further. CONFIG Messages with this level inform of stages in the configuration process of Tiger. They are not errors (otherwise ERROR would be used) but notices for the user running the program explaining, for example, which configuration might be used. OPTIONS -f Scan the indicated security report and generate explanations of it. One explanation will be generated for each unique message id in the security report. If the name of a security report is not given, then the report is read from stdin. -F Output the indicated security report with explanations inserted after each entry in the report. If the name of a security report is not given, then the report is read from stdin. FILES
$TIGERHOMEDIR/doc/explain.idx SEE ALSO
tiger(8) BUGS
If the explanation index is out of date, it doesn't recognize it and generates junk. Security 12 August 2003 TIGEXP(8)
All times are GMT -4. The time now is 10:53 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy