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Top Forums Shell Programming and Scripting How to create a variable without multiple concats in a perl scripts that makes a bsub? Post 302976750 by jim mcnamara on Tuesday 5th of July 2016 01:38:32 PM
Old 07-05-2016
Try string::sprintf():
Code:
fasta_16S=sprintf("%s/%s/%s%s%s%s", 
               $path, ${id}, ${id}, $MIN_READ_LENGTH_16S, ".fasta" );

 

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explain_sprintf(3)					     Library Functions Manual						explain_sprintf(3)

NAME
explain_sprintf - explain sprintf(3) errors SYNOPSIS
#include <libexplain/sprintf.h> const char *explain_sprintf(char *data, const char *format, ...); const char *explain_errno_sprintf(int errnum, char *data, const char *format, ...); void explain_message_sprintf(char *message, int message_size, char *data, const char *format, ...); void explain_message_errno_sprintf(char *message, int message_size, int errnum, char *data, const char *format, ...); DESCRIPTION
These functions may be used to obtain explanations for errors returned by the sprintf(3) system call. explain_sprintf const char *explain_sprintf(char *data, const char *format, ...); The explain_sprintf function is used to obtain an explanation of an error returned by the sprintf(3) system call. The least the message will contain is the value of strerror(errno), but usually it will do much better, and indicate the underlying cause in more detail. The errno global variable will be used to obtain the error value to be decoded. data The original data, exactly as passed to the sprintf(3) system call. format The original format, exactly as passed to the sprintf(3) system call. Returns: The message explaining the error. This message buffer is shared by all libexplain functions which do not supply a buffer in their argument list. This will be overwritten by the next call to any libexplain function which shares this buffer, including other threads. Note: This function is not thread safe, because it shares a return buffer across all threads, and many other functions in this library. Example: This function is intended to be used in a fashion similar to the following example: errno = EINVAL; int result = sprintf(data, format, ...); if (result < 0) { fprintf(stderr, "%s ", explain_sprintf(data, format, ...)); exit(EXIT_FAILURE); } The above code example is available pre-packaged as the explain_sprintf_or_die(3) function. explain_errno_sprintf const char *explain_errno_sprintf(int errnum, char *data, const char *format, ...); The explain_errno_sprintf function is used to obtain an explanation of an error returned by the sprintf(3) system call. The least the mes- sage will contain is the value of strerror(errno), but usually it will do much better, and indicate the underlying cause in more detail. errnum The error value to be decoded, usually obtained from the errno global variable just before this function is called. This is neces- sary if you need to call any code between the system call to be explained and this function, because many libc functions will alter the value of errno. data The original data, exactly as passed to the sprintf(3) system call. format The original format, exactly as passed to the sprintf(3) system call. Returns: The message explaining the error. This message buffer is shared by all libexplain functions which do not supply a buffer in their argument list. This will be overwritten by the next call to any libexplain function which shares this buffer, including other threads. Note: This function is not thread safe, because it shares a return buffer across all threads, and many other functions in this library. Example: This function is intended to be used in a fashion similar to the following example: errno = EINVAL; int result = sprintf(data, format, ...); if (result < 0) { int err = errno; fprintf(stderr, "%s ", explain_errno_sprintf(err, data, format, ...)); exit(EXIT_FAILURE); } The above code example is available pre-packaged as the explain_sprintf_or_die(3) function. explain_message_sprintf void explain_message_sprintf(char *message, int message_size, char *data, const char *format, ...); The explain_message_sprintf function is used to obtain an explanation of an error returned by the sprintf(3) system call. The least the message will contain is the value of strerror(errno), but usually it will do much better, and indicate the underlying cause in more detail. The errno global variable will be used to obtain the error value to be decoded. message The location in which to store the returned message. If a suitable message return buffer is supplied, this function is thread safe. message_size The size in bytes of the location in which to store the returned message. data The original data, exactly as passed to the sprintf(3) system call. format The original format, exactly as passed to the sprintf(3) system call. Example: This function is intended to be used in a fashion similar to the following example: errno = EINVAL; int result = sprintf(data, format, ...); if (result < 0) { char message[3000]; explain_message_sprintf(message, sizeof(message), data, format, ...); fprintf(stderr, "%s ", message); exit(EXIT_FAILURE); } The above code example is available pre-packaged as the explain_sprintf_or_die(3) function. explain_message_errno_sprintf void explain_message_errno_sprintf(char *message, int message_size, int errnum, char *data, const char *format, ...); The explain_message_errno_sprintf function is used to obtain an explanation of an error returned by the sprintf(3) system call. The least the message will contain is the value of strerror(errno), but usually it will do much better, and indicate the underlying cause in more detail. message The location in which to store the returned message. If a suitable message return buffer is supplied, this function is thread safe. message_size The size in bytes of the location in which to store the returned message. errnum The error value to be decoded, usually obtained from the errno global variable just before this function is called. This is neces- sary if you need to call any code between the system call to be explained and this function, because many libc functions will alter the value of errno. data The original data, exactly as passed to the sprintf(3) system call. format The original format, exactly as passed to the sprintf(3) system call. Example: This function is intended to be used in a fashion similar to the following example: errno = EINVAL; int result = sprintf(data, format, ...); if (result < 0) { int err = errno; char message[3000]; explain_message_errno_sprintf(message, sizeof(message), err, data, format, ...); fprintf(stderr, "%s ", message); exit(EXIT_FAILURE); } The above code example is available pre-packaged as the explain_sprintf_or_die(3) function. SEE ALSO
sprintf(3) formatted output conversion explain_sprintf_or_die(3) formatted output conversion and report errors COPYRIGHT
libexplain version 0.52 Copyright (C) 2010 Peter Miller explain_sprintf(3)
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