Sponsored Content
Top Forums Shell Programming and Scripting How to use grep in a loop using a bash script? Post 302976351 by Yoda on Tuesday 28th of June 2016 01:08:33 PM
Old 06-28-2016
Using awk:-
Code:
awk 'NR==FNR{A[$1];next}$1 in A' reference.txt data.txt

Using grep (no need to use cat):-
Code:
grep -f reference.txt data.txt

These 2 Users Gave Thanks to Yoda For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

loop does not execute in bash script?

I have a very basic bash shell script, which has many "while... done; for .... done" loop clauses, like the following ~~ #!/bin/bash while blablalba; do .... done < /tmp/file for line in `cat blablabla`; do grep $line /tmp/raw ; done > /tmp/1; while blablalba2; do .... done <... (2 Replies)
Discussion started by: fedora
2 Replies

2. Shell Programming and Scripting

error in bash script 'if' loop

SEND_MESSAGE=test echo $SEND_MESSAGE if then echo `date` > update_dt_ccaps.lst echo "The file transfer failed" >> update_dt_ccaps.lst SEND_MESSAGE=false fi The above code is showing error in bash shell as : ./test: line 5: [: test: integer expression expected ... (2 Replies)
Discussion started by: DILEEP410
2 Replies

3. Shell Programming and Scripting

Getting error on for loop - bash script

Hi, I am working on bash script after a long time. I am getting error near done statement while running a for loop snippet. The error says "Syntax error near unexpcted token 'done'" please suggest what could be wrong. here is the snippet elements=${#option_arr} //an array of values... (1 Reply)
Discussion started by: arundhati_s
1 Replies

4. Shell Programming and Scripting

(BASH) Using a loop variable to grep something in a file?

Hi, I have a loop running until a variable L that is read previously in the full script. I'd like to grep some information in an input file at a line that contains the value of the loop parameter $i. I've tried to use grep, but the problem is nothing is written in the FILE files. It seems grep... (5 Replies)
Discussion started by: DMini
5 Replies

5. UNIX for Dummies Questions & Answers

Problem with multiple grep in bash loop

Hello, I am trying to create a matrix of 0's and 1's depending on whether a gene and sample name are found in the same line in a file called results.txt. An example of the results.txt file is (tab-delimited): Sample1 Gene1 ## Gene2 ## Sample2 Gene2 ## Gene 4 ## Sample3 Gene3 ... (2 Replies)
Discussion started by: InfoSeeker2
2 Replies

6. Shell Programming and Scripting

Expect script called in loop from Bash Script

Having issues with an expect script. I've been scripting bash, python, etc... for a couple years now, but just started to try and use Expect. Trying to create a script that takes in some arguments, and then for now, just runs a pwd command(for testing, final will be command I pass). Here is... (0 Replies)
Discussion started by: cbo0485
0 Replies

7. Shell Programming and Scripting

Bash script - loop question

Hi Folks, I have a loop that goes through an array and the output is funky. sample: array=( 19.239.211.30 ) for i in "${array}" do echo $i iperf -c $i -P 10 -x CSV -f b -t 50 | awk 'END{print '$i',$6}' >> $file done Output: 19.239.211.30 19.2390.2110.3 8746886 seems that when... (2 Replies)
Discussion started by: nitrohuffer2001
2 Replies

8. Shell Programming and Scripting

While loop with input in a bash script

I have the following while loop that I put in a script, demo.sh: while read rna; do aawork=$(echo "${rna}" | sed -n -e 's/\(...\)\1 /gp' | sed -f rna.sed) echo "$aawork" | sed 's/ //g' echo "$aawork" | tr ' ' '\012' | sort | sed '/^$/d' | uniq -c | sed 's/*\(*\) \(.*\)/\2: \... (3 Replies)
Discussion started by: faizlo
3 Replies

9. UNIX for Beginners Questions & Answers

Help with date in bash script for loop from YYYYMMDDHHMM

Hi everyone I need some help I want to create an script which does some processing it takes the two arguments 201901010000 and 201901020200 - so YYYMMDDHHMM I want to split processing into hours from start until end, I dont get why this works but when I add to a future variable... (1 Reply)
Discussion started by: kl1ngac1k
1 Replies

10. UNIX for Beginners Questions & Answers

Help with a bash loop script

Create a single bash script that does the following: a. Print out the number of occurrences for each motif that is found in the bacterial genome and output to a file called motif_count.txt b. Create a fasta file for each motif (so 3 in total) which contains all of the genes and their... (6 Replies)
Discussion started by: dre
6 Replies
LIBBASH(7)							  libbash Manual							LIBBASH(7)

NAME
libbash -- A bash shared libraries package. DESCRIPTION
libbash is a package that enables bash dynamic-like shared libraries. Actually its a tool for managing bash scripts whose functions you may want to load and use in scripts of your own. It contains a 'dynamic loader' for the shared libraries ( ldbash(1)), a configuration tool (ldbashconfig(8)), and some libraries. Using ldbash(1) you are able to load loadable bash libraries, such as getopts(1) and hashstash(1). A bash shared library that can be loaded using ldbash(1) must answer 4 requirments: 1. It must be installed in $LIBBASH_PREFIX/lib/bash (default is /usr/lib/bash). 2. It must contain a line that begins with '#EXPORT='. That line will contain (after the '=') a list of functions that the library exports. I.e. all the function that will be usable after loading that library will be listed in that line. 3. It must contain a line that begins with '#REQUIRE='. That line will contain (after the '=') a list of bash libraries that are required for our library. I.e. every bash library that is in use in our bash library must be listed there. 4. The library must be listed (For more information, see ldbashconfig(8)). Basic guidelines for writing library of your own: 1. Be aware, that your library will be actually sourced. So, basically, it should contain (i.e define) only functions. 2. Try to declare all variables intended for internal use as local. 3. Global variables and functions that are intended for internal use (i.e are not defined in '#EXPORT=') should begin with: __<library_name>_ For example, internal function myfoosort of hashstash library should be named as __hashstash_myfoosort This helps to avoid conflicts in global name space when using libraries that come from different vendors. 4. See html manual for full version of this guide. AUTHORS
Hai Zaar <haizaar@haizaar.com> Gil Ran <ril@ran4.net> SEE ALSO
ldbash(1), ldbashconfig(8), getopts(1), hashstash(1) colors(1) messages(1) urlcoding(1) locks(1) Linux Epoch Linux
All times are GMT -4. The time now is 04:57 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy