Sponsored Content
Top Forums Shell Programming and Scripting Bash to select and save file in new directory Post 302975801 by RudiC on Sunday 19th of June 2016 04:54:37 AM
Old 06-19-2016
How about (ad[ao]pting Aia's proposal):

Code:
PS3="please select a file to analyze with entered gene or genes (or 1 or q to quit): "
select ANSW in  exit /mnt/9/playground/*
                    do  case $REPLY in 1|[eq]*) break;; esac
                        echo $ANSW "will be used to filter reads, identify target bases and genes less than 20 and 30 reads, create a low coverage bed for vizulization, and calcul
                        echo "Start selected file creation: Panel: ${FUNCNAME[0]} Date: $(date) - File: $ANSW"
                        file=${ANSW##*/}
                        echo mv -v "$ANSW" /mnt/9/playground/LA/${file%.jpg}_OTHER.txt ;    
                        echo "End selected file creation: $(date) - File: $ANSW"
                    done | tee LOG


Last edited by RudiC; 06-19-2016 at 06:00 AM..
 

9 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

[bash] redirect (save) array to a file

Hi, I'm trying to write a function that redirects the contents of an array to a file. The array contains the lines of a data file with white space. The function seems to preserve all white space when redirected except that it seems to ignore newlines. As a consequence, the elements of the... (7 Replies)
Discussion started by: ASGR
7 Replies

2. Shell Programming and Scripting

select data from oracle table and save the output as csv file

Hi I need to execute a select statement in a solaris environment with oracle database. The select statement returns number of rows of data. I need the data to be inserted into a CSV file with proper format. For that we normally use "You have to select all your columns as one big string,... (2 Replies)
Discussion started by: rdhanek
2 Replies

3. Shell Programming and Scripting

Save output into file bash scripting

Hi there. i have created a program that in the end it will give output like this 1 2 3 4 5 10 9 8 7 6 11 12 13 14 15 .............. 17 i wonder how to save the output into a single string and into a file. i.e 1 10 11 12 9 2 3 8 13 14 7 4 5 6 15 17 (in this order,... (3 Replies)
Discussion started by: shdin271
3 Replies

4. Homework & Coursework Questions

Save output into file bash scripting

Use and complete the template provided. The entire template must be completed. If you don't, your post may be deleted! 1. The problem statement, all variables and given/known data: Hi there. i have created a program that in the end it will give output like this 1 2 3 4 5 10 9 ... (1 Reply)
Discussion started by: shdin271
1 Replies

5. Shell Programming and Scripting

Bash to select panel then specific file in directory

I am using bash to prompt a user for a choice using: where a "y" response opens a menu with available panels that can be used. while true; do read -p "Do you want to get coverage of a specific panel?" yn case $yn in * ) menu; break;; * ) exit;; * ) echo... (6 Replies)
Discussion started by: cmccabe
6 Replies

6. Shell Programming and Scripting

Bash to select oldest folder in directory automatically and log process

The `bash` below uses the oldest folder in the specified directory and logs it. The goes though an analysis process and creates a log. My problem is that if there are 3 folders in the directory folder1,folder2,folder3, the bash is using folder2 for the analysis eventhough folder1 is the oldest... (0 Replies)
Discussion started by: cmccabe
0 Replies

7. Shell Programming and Scripting

Bash to select text and apply it to a selected file in bash

In the bash below I am asking the user for a panel and reading that into bed. Then asking the user for a file and reading that into file1.Is the grep in bold the correct way to apply the selected panel to the file? I am getting a syntax error. Thank you :) ... (4 Replies)
Discussion started by: cmccabe
4 Replies

8. Shell Programming and Scripting

Bash to select oldest folder in directory and write to log

In the bash below the oldest folder in a directory is selected. If there are 3folders in the directory /home/cmccabe/Desktop/NGS/test and nothing is done to them (ie. no files deleted, renamed) then the bash correctly identifies f1 as the oldest. However, if something is done to the folder then... (4 Replies)
Discussion started by: cmccabe
4 Replies

9. UNIX for Beginners Questions & Answers

Unset array element and save to file in Bash

#!/bin/bash X=(2H 4S 10D QC JD 9H 8S) How do I unset the 10D from this array and save it to a file? Please use CODE tags as required by forum rules! (5 Replies)
Discussion started by: cogiz
5 Replies
SYSPROFILE(8)						      System Manager's Manual						     SYSPROFILE(8)

NAME
sysprofile - modular centralized shell configuration DESCRIPTION
sysprofile is a generic approach to configure shell settings in a modular and centralized way mostly aimed at avoiding work for lazy sysad- mins. It has only been tested to work with the bash shell. It basically consists of the small /etc/sysprofile shell script which invokes other small shell scripts having a .bash suffix which are contained in the /etc/sysprofile.d/ directory. The system administrator can drop in any script he wants without any naming convention other than that the scripts need to have a .bash suffix to enable automagic sourcing by /etc/sysprofile. This mechanism is set up by inserting a small shell routine into /etc/profile for login shells and optionally into /etc/bashrc and/or /etc/bash.bashrc for non-login shells from where the actual /etc/sysprofile script is invoked: if [ -f /etc/sysprofile ]; then . /etc/sysprofile fi For using "sysprofile" under X11, one can source it in a similar way from /etc/X11/Xsession or your X display manager's Xsession file to provide the same shell environment as under the console in X11. See the example files in /usr/share/doc/sysprofile/ for illustration. For usage of terminal emulators with a non-login bash shell under X11, take care to enable sysprofile via /etc/bash.bashrc. If not set this way, your terminal emulators won't come up with the environment defined by the scripts in /etc/sysprofile.d/. Users not wanting /etc/sysprofile to be sourced for their environment can easily disable it's automatic mechanism. It can be disabled by simply creating an empty file called $HOME/.nosysprofile in the user's home directory using e.g. the touch(1) command. Any single configuration file in /etc/sysprofile.d/ can be overridden by any user by creating a private $HOME/.sysprofile.d/ directory which may contain a user's own version of any configuration file to be sourced instead of the system default. It's names have just to match exactly the system's default /etc/sysprofile.d/ configuration files. Empty versions of these files contained in the $HOME/.syspro- file.d/ directory automatically disable sourcing of the system wide version. Naturally, users can add and include their own private script inventions to be automagically executed by /etc/sysprofile at login time. OPTIONS
There are no options other than those dictated by shell conventions. Anything is defined within the configuration scripts themselves. SEE ALSO
The README files and configuration examples contained in /etc/sysprofile.d/ and the manual pages bash(1), xdm(1x), xdm.options(5), and wdm(1x). Recommended further reading is everything related with shell programming. If you need a similar mechanism for executing code at logout time check out the related package syslogout(8) which is a very close compan- ion to sysprofile. BUGS
sysprofile in its current form is mainly restricted to bash(1) syntax. In fact it is actually a rather embarrassing quick and dirty hack than anything else - but it works. It serves the practical need to enable a centralized bash configuration until something better becomes available. Your constructive criticism in making this into something better" is very welcome. Before i forget to mention it: we take patches... ;-) AUTHOR
sysprofile was developed by Paul Seelig <pseelig@debian.org> specifically for the Debian GNU/Linux system. Feel free to port it to and use it anywhere else under the conditions of either the GNU public license or the BSD license or both. Better yet, please help to make it into something more worthwhile than it currently is. SYSPROFILE(8)
All times are GMT -4. The time now is 04:05 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy