Hi,
I need to delete an empty directory in a temp directory except "dir5" (keep everything that is not empty).
Plese advise.
Here is an example of my directory.
/dir/temp/
dir1 - delete if this is empty
dir2 - delete if this is empty
dir3 - delete if this is empty
dir4 - delete if this... (7 Replies)
I know this one was answered before in forum below -
https://www.unix.com/unix-dummies-questions-answers/58210-removing-empty-folders-using-find-command.html
But that one is closed & I have a question so here it goes.
I want to delete all 2006 files. Now if along with the files, if the... (2 Replies)
Hello:
I searched here for "vi -c" but found no hits.
How can I use vi -c to remove ALL empty lines, regardless of how many?
I tried
<code>
vi -c ":g/^$/d | wq" filename
</code>
but I have to run it several times.
This is NOT homework. :)
Thanks for your time. (3 Replies)
Hi all,
I'm trying to remove when this condition is met: an empty and the next one
I'm using this command:
sed '/^$/N; s/&//' file
Which searches for an empty line, N attaches it to the next line, and substituing the combination with nothing.... but it is not working.
What I'm missing... (1 Reply)
Hi all !
I'm sure it is a basic question but I didn't find any threads that fit my need.
How to remove empty fields with awk?
Or in other words, how to shift all the fields after an empty field on the left?
input:
1|2||3|4|5||6
wanted:
1|2|3|4|5|6
I tried:
awk '{for(i=1; i<=NF;... (7 Replies)
Hello:
Is there a simple way to remove empty records of FASTA format file?
A FASTA format consists of two parts: header and sequence (for non-biologist, Wiki for details of course!). The header always start with ">" for the name of the sequence. The header must be in this ONLY single line.... (9 Replies)
Hello,
I need a program that read a file line by line and prints out lines 1, 2 & 3 after an empty line... An example of entries in the file would be:
SRVXPAPI001 ERRO JUN24 07:28:34 1775
REASON= 0000, PROCID= #E506 #1065: TPCIPPR, INDEX= 003F
... (8 Replies)
Hi all,
I've got a file that has 12 fields. I've merged 2 files and there will be some duplicates in the following:
FILE:
1. ABC, 12345, TEST1, BILLING, GV, 20/10/2012, C, 8, 100, AA, TT, 100
2. ABC, 12345, TEST1, BILLING, GV, 20/10/2012, C, 8, 100, AA, TT, (EMPTY)
3. CDC, 54321, TEST3,... (4 Replies)
Discussion started by: tugar
4 Replies
LEARN ABOUT DEBIAN
cd-hit-para
CD-HIT-PARA.PL(1) User Commands CD-HIT-PARA.PL(1)NAME
cd-hit-para.pl - divide a big clustering job into pieces to run cd-hit or cd-hit-est jobs
SYNOPSIS
cd-hit-para.pl options
DESCRIPTION
This script divide a big clustering job into pieces and submit jobs to remote computers over a network to make it parallel. After
all the jobs finished, the script merge the clustering results as if you just run a single cd-hit or cd-hit-est.
You can also use it to divide big jobs on a single computer if your computer does not have enough RAM (with -L option).
Requirements:
1 When run this script over a network, the directory where you
run the scripts and the input files must be available on all the remote hosts with identical path.
2 If you choose "ssh" to submit jobs, you have to have
passwordless ssh to any remote host, see ssh manual to know how to set up passwordless ssh.
3 I suggest to use queuing system instead of ssh,
I currently support PBS and SGE
4 cd-hit cd-hit-2d cd-hit-est cd-hit-est-2d
cd-hit-div cd-hit-div.pl must be in same directory where this script is in.
Options
-i input filename in fasta format, required
-o output filename, required
--P program, "cd-hit" or "cd-hit-est", default "cd-hit"
--B filename of list of hosts,
requred unless -Q or -L option is supplied
--L number of cpus on local computer, default 0
when you are not running it over a cluster, you can use this option to divide a big clustering jobs into small pieces, I suggest you
just use "--L 1" unless you have enough RAM for each cpu
--S Number of segments to split input DB into, default 64
--Q number of jobs to submit to queue queuing system, default 0
by default, the program use ssh mode to submit remote jobs
--T type of queuing system, "PBS", "SGE" are supported, default PBS
--R restart file, used after a crash of run
-h print this help
More cd-hit/cd-hit-est options can be speicified in command line
Questions, bugs, contact Weizhong Li at liwz@sdsc.edu
cd-hit-para.pl 4.6-2012-04-25 April 2012 CD-HIT-PARA.PL(1)