how would you calculate percentage by per line? Given a column of 16 lines, grab each line and divide it by the sum of the entire column and multiply by 100?
thanks ... (8 Replies)
Hi all,
Is there a way to convert full data matrix to linearised left data matrix?
e.g full data matrix
Bh1 Bh2 Bh3 Bh4 Bh5 Bh6 Bh7
Bh1 0 0.241058 0.236129 0.244397 0.237479 0.240767 0.245245
Bh2 0.241058 0 0.240594 0.241931 0.241975 ... (8 Replies)
Hi everyone
I am very new at awk but think that that might be the best strategy for this. I have a matrix very similar to a correlation matrix and in practical terms I need to convert it into a list containing the values from the matrix (one value per line) with the first field of the line (row... (5 Replies)
i am trying to get percentage : but not able to do it:
i tried :
x=1
y=2
z=`expr $x/$y*100`
it is not giving me result
can u pls help on this (4 Replies)
Dear all,
I have data like below and i need to add coloumn before the COUNT field to see the Percentage out of all COUNT field value for respective raw.
=============================================
COUNT CODE sConnType tConnType... (6 Replies)
Hi,
I am looking for generic commands / scripts that could run across platforms especially on HP Itanium boxes to give me % of free OS parameters
For eg:
Free Total Memory RAM : 20 %
Free Total Swap Memory: 35%
Free Total CPU utilisation: 44%
Free Disk Space: /appl = 55%... (5 Replies)
This matrix represents correlation values.
Is it possible to calculate the percentage of columns (a1, a2, a3) that have a value >= |0.5| and report the percentage that has positive correlation >0.5 and negative correlation <-0.5 separately. thanx in advance!
input
name a1 a2 a3... (5 Replies)
Hi,
I have a text file in below format.
I trying to find a solution for finding percentage used for each of the NAMEs.
Directory ALLOCATED USED
NAME1 93MB 93KB
NAME2 25G 62K
NAME3 14G 873M
NAME4 25G 62K
NAME5 20G... (10 Replies)
Discussion started by: ctrld
10 Replies
LEARN ABOUT DEBIAN
bio::matrix::scoring
Bio::Matrix::Scoring(3pm) User Contributed Perl Documentation Bio::Matrix::Scoring(3pm)NAME
Bio::Matrix::Scoring - Object which can hold scoring matrix information
SYNOPSIS
use Bio::Matrix::Scoring;
DESCRIPTION
An object which can handle AA or NT scoring matrix information. Some transformation properties are available too.
FEEDBACK
Mailing Lists
User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
Bioperl mailing list. Your participation is much appreciated.
bioperl-l@bioperl.org - General discussion
http://bioperl.org/wiki/Mailing_lists - About the mailing lists
Support
Please direct usage questions or support issues to the mailing list:
bioperl-l@bioperl.org
rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
it. Please include a thorough description of the problem with code and data examples if at all possible.
Reporting Bugs
Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
web:
https://redmine.open-bio.org/projects/bioperl/
AUTHOR - Jason Stajich
Email jason-at-bioperl-dot-org
APPENDIX
The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _
new
Title : new
Usage : my $obj = Bio::Matrix::Scoring->new();
Function: Builds a new Bio::Matrix::Scoring object
Returns : an instance of Bio::Matrix::Scoring
Args :
entropy
Title : entropy
Usage : $obj->entropy($newval)
Function:
Example :
Returns : value of entropy (a scalar)
Args : on set, new value (a scalar or undef, optional)
expected_score
Title : expected_score
Usage : $obj->expected_score($newval)
Function:
Example :
Returns : value of expected (a scalar)
Args : on set, new value (a scalar or undef, optional)
scale
Title : scale
Usage : $obj->scale($newval)
Function:
Example :
Returns : value of scale (a scalar)
Args : on set, new value (a scalar or undef, optional)
scale_value
Title : scale_value
Usage : $obj->scale_value($newval)
Function:
Example :
Returns : value of scale_value (a scalar)
Args : on set, new value (a scalar or undef, optional)
description
Title : description
Usage : $obj->description($newval)
Function:
Example :
Returns : value of description (a scalar)
Args : on set, new value (a scalar or undef, optional)
database
Title : database
Usage : $obj->database($newval)
Function:
Example :
Returns : value of database (a scalar)
Args : on set, new value (a scalar or undef, optional)
lowest_score
Title : lowest_score
Usage : $obj->lowest_score($newval)
Function:
Example :
Returns : value of lowest_score (a scalar)
Args : on set, new value (a scalar or undef, optional)
highest_score
Title : highest_score
Usage : $obj->highest_score($newval)
Function:
Example :
Returns : value of highest_score (a scalar)
Args : on set, new value (a scalar or undef, optional)
lambda
Title : lambda
Usage : $obj->lambda($newval)
Function:
Example :
Returns : value of lambda (a scalar)
Args : on set, new value (a scalar or undef, optional)
H
Title : H
Usage : $obj->H($newval)
Function:
Example :
Returns : value of H (a scalar)
Args : on set, new value (a scalar or undef, optional)
perl v5.14.2 2012-03-02 Bio::Matrix::Scoring(3pm)