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Top Forums UNIX for Dummies Questions & Answers Reporting characters after string Post 302970859 by Xterra on Tuesday 12th of April 2016 02:52:54 PM
Old 04-12-2016
I will install mawk and report back
Sorry, my code should be as follows:
Code:
 sed -n '/AATTCCGG/s/^[ATCG]*AATTCCGG\(....\)[ATCG]*$/\1/p; /CCGGAATT/{y/ATCG/TAGC/; s/^[ATCG]*\(.\)\(.\)\(.\)\(.\)GGCCTTAA[ATCG]*$/\4\3\2\1/p;}'

I can search all occurrences in each and every line using global:
Code:
 sed -n '/AATTCCGG/s/^[ATCG]*AATTCCGG\(....\)[ATCG]*$/\1/pg; /CCGGAATT/{y/ATCG/TAGC/; s/^[ATCG]*\(.\)\(.\)\(.\)\(.\)GGCCTTAA[ATCG]*$/\4\3\2\1/pg;}'

I still wondering how would you limit your awk script to only 10 occurrences in the file

Last edited by Xterra; 04-12-2016 at 03:54 PM.. Reason: comment
 

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