Also since you are using GNU awk, you could try replacing the function with
which should also work for mawk..
A mawk package is available for Bio-Linux you should be able to just install it, if it is not installed on your system by default. Could you try and test with that and see if the results are correct and what the performance results are? The difference can be extraordinary in certain cases..
Last edited by Scrutinizer; 04-12-2016 at 12:23 AM..
I need help to strip out the first two characters of the variable $FileName. Please help.
FileName=`find . -mtime +0 -name '*'`
Contents of variable $FileName:
./SRIZVI4.MCR_IDEAS_REPORT.LAST.052705.075405.csv
I want to strip out "./" and place the contents in another variable. How do I... (3 Replies)
Can someone please help me figure out what the command syntax I need to use is?
Here is what I am wanting to do.
I have hundreds of thousands of files I need to look for a specific search string in.
These files are spread across multiple subdirectories from one main directory.
I would like... (4 Replies)
Hello everyone,
I'm writing a script to add a string to an XML file, right after a specified string that only occurs once in the file. For testing purposes I created a file 'testfile' that looks like this:
1
2
3
4
5
6
6
7
8
9
And this is the script as far as I've managed:
... (2 Replies)
This is a pretty straight-forward question. Within a program of mine, I have a string that's going to be used as a filename, but it might have some invalid characters in it that wouldn't be valid in a filename. If there are any invalid characters, I want to get rid of them and essentially squeeze... (4 Replies)
Hi Everyone,
I have a.txt
12341" <sip:191@vo.my>;asdf=q"
116aaaa<sip:00091@vo.my>;penguin
would like to get the output
191
00091
Please advice.
Thanks (4 Replies)
Hi all,
I like to know how to get the count of each character in a given word. Using the commands i can easily get the output. How do it without using the commands ( in shell programming or any programming)
if you give outline of the program ( pseudo code )
i used the following commands
... (3 Replies)
Hello. How can i put all of the special characters on my keyboard into a string in c++ ?
I tried this but it doesn't work.
string characters("~`!@#$%^&*()_-+=|\}]{
How can i accomplish this?
Thanks in advance. (1 Reply)
Hello Folks..
I need your help ..
here the example of my problem..i know its easy..i don't all the commands in unix to do this especiallly sed...here my string..
dwc2_dfg_ajja_dfhhj_vw_dec2_dfgh_dwq
desired output is..
dwc2_dfg_ajja_dfhhj
it's a simple task with tail... (5 Replies)
Hi All,
I am trying to extract only characters from a string value eg: abcdedg1234.cnf
How can I extract only characters abcdedg and assign to a variable.
Please help.
Thanks (2 Replies)
I have this fastq file:
@M04961:22:000000000-B5VGJ:1:1101:9280:7106 1:N:0:86
GGGGGGGGGGGGCATGAAAACATACAAACCGTCTTTCCAGAAATTGTTCCAAGTATCGGCAACAGCTTTATCAATACCATGAAAAATATCAACCACACCA
+test-1
GGGGGGGGGGGGGGGGGCCGGGGGFF,EDFFGEDFG,@DGGCGGEGGG7DCGGGF68CGFFFGGGG@CGDGFFDFEFEFF:30CGAFFDFEFF8CAF;;8... (10 Replies)