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Top Forums UNIX for Dummies Questions & Answers Matching string and assembling Post 302969901 by Xterra on Tuesday 29th of March 2016 05:36:43 PM
Old 03-29-2016
Rudi
Thanks! First script is outputting the right sequences.
Code:
>read1 ori 498
AGAGAGACCTGGAGAGAGAGT
>read2 ori-rep 500
AGAGAGACCTGGAGAGAGAGT
>read3 1-misma 456
GGAGAGACCTGGAGAGAGAGT
>read4 2-misma 456
TGAGAGACCTGGAGAGAGAGA
>read5 ori-rev 532
ACTCTCTCTCCAGGTCTCTCT
>read6 ori-rev-1-misma 499
ACTCTCTCTCCAGGTCTCTCC
>read7 medium 512
AGAGAGAGTGACGATGAGCAG
>read8 last 488
AGTGACGATGACGTACGATAGCAGTAGACGCA
>read9 last rep 488
AGTGACGATGACGTACGATAGCAGTAGACGCA
>read10 last gap 488
AGTGACGATGACGTACGATAGCAGTAGACGA

However, sequences 5 and 6 should be reversed and complemented to meet the criteria -all other ones should be reported "as is"
The second script is not given the desired output:
Code:
>read1 ori 498
AGAGAGACCTGGAGAGAGAGT
ACTCTCTCTCCAGGTCTCTCT
>read2 ori-rep 500
AGAGAGACCTGGAGAGAGAGT
ACTCTCTCTCCAGGTCTCTCT
>read3 1-misma 456
GGAGAGACCTGGAGAGAGAGT
ACTCTCTCTCCAGGTCTCTCC
>read4 2-misma 456
TGAGAGACCTGGAGAGAGAGA
TCTCTCTCTCCAGGTCTCTCA
>read5 ori-rev 532
ACTCTCTCTCCAGGTCTCTCT
AGAGAGACCTGGAGAGAGAGT
>read6 ori-rev-1-misma 499
ACTCTCTCTCCAGGTCTCTCC
GGAGAGACCTGGAGAGAGAGT
>read7 medium 512
AGAGAGAGTGACGATGAGCAG
CTGCTCATCGTCACTCTCTCT
>read8 last 488
AGTGACGATGACGTACGATAGCAGTAGACGCA
TGCGTCTACTGCTATCGTACGTCATCGTCACT
>read9 last rep 488
AGTGACGATGACGTACGATAGCAGTAGACGCA
TGCGTCTACTGCTATCGTACGTCATCGTCACT
>read10 last gap 488
AGTGACGATGACGTACGATAGCAGTAGACGA
TCGTCTACTGCTATCGTACGTCATCGTCACT

I will go over your first script to see if I can modify it to meet my needs.
Thanks a bunch!
 

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DTK_MOVE_SHAPE(3)						Draw Toolkit manual						 DTK_MOVE_SHAPE(3)

NAME
dtk_move_shape, dtk_relmove_shape, dtk_rotate_shape, dtk_relrotate_shape - shape displacement SYNOPSIS
#include <drawtk.h> void dtk_move_shape(dtk_hshape shp, float x, float y); void dtk_relmove_shape(dtk_hshape shp, float dx, float dy); void dtk_rotate_shape(dtk_hshape shp, float deg); void dtk_relrotate_shape(dtk_hshape shp, float ddeg); DESCRIPTION
These functions control the position and the rotation with which the shape shp will be next drawn. dtk_move_shape() set the translation the shape for the next draws. The position defined by x and y corresponds to the position of the ori- gin of the shape (corresponding to the point (0,0) when the shape has been created). dtk_rotate_shape() set the rotation (counter-clockwise) of the shape around its origin of the shape. This rotation is performed relatively to the initial posture of the shape (at creation time). The argument deg specify the angle of rotation expressed in degrees. dtk_relmove_shape() and dtk_relrotate_shape() do the same excepting that their arguments dx, dy and ddeg updates the current parameters of the translation and rotation. RETURN VALUE
None of these functions returns value. SEE ALSO
dtk_draw_shape(3) EPFL
2010 DTK_MOVE_SHAPE(3)
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