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Top Forums UNIX for Dummies Questions & Answers Matching string and assembling Post 302969901 by Xterra on Tuesday 29th of March 2016 05:36:43 PM
Old 03-29-2016
Rudi
Thanks! First script is outputting the right sequences.
Code:
>read1 ori 498
AGAGAGACCTGGAGAGAGAGT
>read2 ori-rep 500
AGAGAGACCTGGAGAGAGAGT
>read3 1-misma 456
GGAGAGACCTGGAGAGAGAGT
>read4 2-misma 456
TGAGAGACCTGGAGAGAGAGA
>read5 ori-rev 532
ACTCTCTCTCCAGGTCTCTCT
>read6 ori-rev-1-misma 499
ACTCTCTCTCCAGGTCTCTCC
>read7 medium 512
AGAGAGAGTGACGATGAGCAG
>read8 last 488
AGTGACGATGACGTACGATAGCAGTAGACGCA
>read9 last rep 488
AGTGACGATGACGTACGATAGCAGTAGACGCA
>read10 last gap 488
AGTGACGATGACGTACGATAGCAGTAGACGA

However, sequences 5 and 6 should be reversed and complemented to meet the criteria -all other ones should be reported "as is"
The second script is not given the desired output:
Code:
>read1 ori 498
AGAGAGACCTGGAGAGAGAGT
ACTCTCTCTCCAGGTCTCTCT
>read2 ori-rep 500
AGAGAGACCTGGAGAGAGAGT
ACTCTCTCTCCAGGTCTCTCT
>read3 1-misma 456
GGAGAGACCTGGAGAGAGAGT
ACTCTCTCTCCAGGTCTCTCC
>read4 2-misma 456
TGAGAGACCTGGAGAGAGAGA
TCTCTCTCTCCAGGTCTCTCA
>read5 ori-rev 532
ACTCTCTCTCCAGGTCTCTCT
AGAGAGACCTGGAGAGAGAGT
>read6 ori-rev-1-misma 499
ACTCTCTCTCCAGGTCTCTCC
GGAGAGACCTGGAGAGAGAGT
>read7 medium 512
AGAGAGAGTGACGATGAGCAG
CTGCTCATCGTCACTCTCTCT
>read8 last 488
AGTGACGATGACGTACGATAGCAGTAGACGCA
TGCGTCTACTGCTATCGTACGTCATCGTCACT
>read9 last rep 488
AGTGACGATGACGTACGATAGCAGTAGACGCA
TGCGTCTACTGCTATCGTACGTCATCGTCACT
>read10 last gap 488
AGTGACGATGACGTACGATAGCAGTAGACGA
TCGTCTACTGCTATCGTACGTCATCGTCACT

I will go over your first script to see if I can modify it to meet my needs.
Thanks a bunch!
 

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define cached server(1m)												  define cached server(1m)

NAME
define cached server - Creates knowledge of a server in the local clerk's cache SYNOPSIS
cdscp define cached server name tower value ARGUMENTS
A simple name for the cached server. The protocol sequence and network address of the server node. The format is protocol-sequence:net- work-address. A protocol-sequence is a character string identifying the network protocols used to establish a relationship between a client and server. There are two choices of protocol sequence, depending on the network address that is supplied in the binding: ncacn_ip_tcp or ncadg_ip_udp. For the network-address, specify an Internet address using the common Internet address notation. For more information about this format, see the RPC introduction in the DCE Application Development Reference. DESCRIPTION
The define cached server command creates knowledge of a server in the local clerk's cache. This command is typically used to manually pro- vide configuration information to a clerk that cannot automatically configure itself. This is required, for instance, to give the clerk addressing information about a server across a WAN. Once the clerk knows about one server, it can find other servers through referrals. Privilege Required You must have write permission to the clerk. NOTE
This command is replaced at Revision 1.1 by the dcecp command and may not be provided in future releases of DCE. EXAMPLES
The following command creates knowledge of the server nrl in the local clerk's cache: cdscp> define cached server nrl tower ncacn_ip_tcp:16.20.15.25 RELATED INFORMATION
Commands: clear cached server(1m), dump clerk cache(1m), show cached server(1m) Books: OSF DCE Application Development Reference define cached server(1m)
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