Hi All,
I need the modification for the below mentioned code (found in one more post https://www.unix.com/shell-programming-scripting/27161-script-generate-average-values.html) to find the average values for all the columns(but for a specific rows) and print the averages side by side.
I have... (4 Replies)
Hi,
I have a file which looks like this:
FID IID MISS_PHENO N_MISS N_GENO F_MISS
12AB43131 12AB43131 N 17774 906341 0.01961
65HJ87451 65HJ87451 N 10149 906341 0.0112
43JJ21345 43JJ21345 N 2826 906341 0.003118I would... (11 Replies)
Hi to all,
I have two files. File1 has no header, two columns:
sample1 A
sample2 B
sample3 B
sample4 C
sample5 A
sample6 D
sample7 D
File2 has a header, except for the first 3 columns (chr,start,end). "sample1" is the header for the 4th ,5th ,6th columns, "sample2" is the header... (4 Replies)
Hello,
I have some tab delimited text files with a three header rows. The headers look like, (sorry the tabs look so messy).
index group Name input input input input input input input input input input input... (9 Replies)
Hi experts,
I want to group by average, for multiple columns starting column $7 until NF,
group by ($1-$5), please help
For just 7th column, I can do
awk '
NR>1{
arr += $7
count += 1
}
END{
for (a in arr) {
print a, arr/count
... (10 Replies)
I have this code below that only prints out certain columns from the first two rows (doesn't affect rows 3 and beyond). How can I do the same on a partial header pattern “G_TP” instead of having to know specific column numbers (e.g. 374-479)? I've tried many other commands within this pipe with no... (4 Replies)
Hello,
I have to fish out some specific columns from a file based on the header value. I have the list of columns I need in a different file. I thought I could read in the list of headers I need,
# file with header names of required columns in required order
headers_file=$2
# read contents... (11 Replies)
hello, I have three files in the following order
==> File1 <==
1 20977000 20977000 A C 1.00 0,15 15 45
1 115829313 115829313 G A 0.500 6,7 13 99
==> File2 <==
1 20977000 20977000 A C 1.00 0,13 13 39
1 115829313 ... (5 Replies)
I have files that have the following columns
chr pos ref alt sample 1 sample 2 sample 3
chr2 179644035 G A 1,107 0,1 58,67
chr7 151945167 G T 142,101 100,200 500,700
chr13 31789169 CTT CT,C 6,37,8 0,0,0 15,46,89
chr22 ... (3 Replies)
Discussion started by: nans
3 Replies
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swiss::stars::ev
SWISS::Stars::EV(3pm) User Contributed Perl Documentation SWISS::Stars::EV(3pm)
new
fromText
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sort
addEvidence($category, $type, $initials, $attributes [, $date])
Title: addEvidence
Usage: $evidenceTag = $entry->Stars->EV->addEvidence($category,
$type,
$initials,
$attributes
[, $date])
Function: adds the evidence to the EV block if it does not yet exist
or returns the correct evidence tag if the evidence already exists,
possibly with a different date.
Args: $category: the evidence category. Currently one of 'A', 'C', 'I','P'.
$type: the evidence type
$initials: The initals of the person doing the update.
For programs this should be '-'.
$attributes: the attributes of the evidence
$date: optional. If present, it must be in standard SWISS-PROT
date format. If not present the current date will be used.
Returns: The correct evidence tag.
updateEvidence($category, $type, $initials, $attributes [, $date])
Title: updateEvidence
Usage: $evidenceTag = $entry->Stars->EV->updateEvidence($category,
$type,
$initials,
$attributes
[, $date])
Function: updates the evidence to the EV block to $date or inserts it
if it does not yet exist.
Args: $category: the evidence category. Currently one of 'A', 'C', 'I','P'.
$type: the evidence type
$initials: The initals of the person doing the update.
For programs this should be '-'.
$attributes: the attributes of the evidence
$date: optional. If present, it must be in standard SWISS-PROT
date format. If not present the current date will be used.
Returns: The correct evidence tag.
Name
SWISS::Stars::EV.pm
Description
SWISS/Stars/EV.pm represents the evidence section within an SWISS-PROT + TrEMBL entry. See
http://www3.ebi.ac.uk/~sp/intern/projects/evidenceTags/index.html
For a usage example, see evTest.pl in the Swissknife package.
Inherits from SWISS::ListBase.pm
Attributes
"list" Each element of the list describes one evidence, itself represented as an array.
perl v5.10.1 2006-01-26 SWISS::Stars::EV(3pm)