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Homework and Emergencies Emergency UNIX and Linux Support Average columns based on header name Post 302969067 by Don Cragun on Thursday 17th of March 2016 03:08:07 PM
Old 03-17-2016
I do not understand what output you are trying to produce.

For each input gene line do you want:
  1. one output line with the gene number and 10 averages from all 13 samples,
  2. thirteen output lines with the gene number and the 10 averages from one sample on each line, or
  3. one output line with the gene number and 130 averages where each set of 10 averages comes from one sample?
Can you show us the exact output you're hoping to produce from the data provided in your sample input for genes 1 and 2?

Was the data for gene 3 in your sample truncated, or will some inputs have missing fields that should be treated as zero values when computing the averages?
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SWISS::Stars::EV(3pm)					User Contributed Perl Documentation				     SWISS::Stars::EV(3pm)

   new
   fromText
   toText
   sort
   addEvidence($category, $type, $initials, $attributes [, $date])
	Title:	  addEvidence

	Usage:	  $evidenceTag = $entry->Stars->EV->addEvidence($category,
								$type,
								$initials,
								$attributes
								[, $date])

	Function: adds the evidence to the EV block if it does not yet exist
		  or returns the correct evidence tag if the evidence already exists,
		  possibly with a different date.

	Args:	 $category: the evidence category. Currently one of 'A', 'C', 'I','P'.
		 $type: the evidence type
		 $initials: The initals of the person doing the update.
			    For programs this should be '-'.
		 $attributes: the attributes of the evidence
		 $date: optional. If present, it must be in standard SWISS-PROT
			date format. If not present the current date will be used.

	Returns: The correct evidence tag.

   updateEvidence($category, $type, $initials, $attributes [, $date])
	Title:	  updateEvidence

	Usage:	  $evidenceTag = $entry->Stars->EV->updateEvidence($category,
								   $type,
								   $initials,
								   $attributes
								   [, $date])

	Function: updates the evidence to the EV block to $date or inserts it
		  if it does not yet exist.

	Args:	 $category: the evidence category. Currently one of 'A', 'C', 'I','P'.
		 $type: the evidence type
		 $initials: The initals of the person doing the update.
			    For programs this should be '-'.
		 $attributes: the attributes of the evidence
		 $date: optional. If present, it must be in standard SWISS-PROT
			date format. If not present the current date will be used.

	Returns: The correct evidence tag.

Name
       SWISS::Stars::EV.pm

Description
       SWISS/Stars/EV.pm represents the evidence section within an SWISS-PROT + TrEMBL entry. See
       http://www3.ebi.ac.uk/~sp/intern/projects/evidenceTags/index.html

       For a usage example, see evTest.pl in the Swissknife package.

Inherits from SWISS::ListBase.pm
Attributes
       "list" Each element of the list describes one evidence, itself represented as an array.

perl v5.10.1							    2006-01-26						     SWISS::Stars::EV(3pm)
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