Bio::Align::StatisticsI(3pm)				User Contributed Perl Documentation			      Bio::Align::StatisticsI(3pm)

NAME

       Bio::Align::StatisticsI - Calculate some statistics for an alignment

SYNOPSIS

       Give standard usage here

DESCRIPTION

       Describe the interface here

FEEDBACK

   Mailing Lists
       User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to the
       Bioperl mailing list.  Your participation is much appreciated.

	 bioperl-l@bioperl.org			- General discussion
	 http://bioperl.org/wiki/Mailing_lists	- About the mailing lists

   Support
       Please direct usage questions or support issues to the mailing list:

       bioperl-l@bioperl.org

       rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address
       it. Please include a thorough description of the problem with code and data examples if at all possible.

   Reporting Bugs
       Report bugs to the Bioperl bug tracking system to help us keep track of the bugs and their resolution. Bug reports can be submitted via the
       web:

	 https://redmine.open-bio.org/projects/bioperl/

AUTHOR - Jason Stajich
       Email jason@bioperl.org

APPENDIX

       The rest of the documentation details each of the object methods.  Internal methods are usually preceded with a _

   distance
	Title	: distance
	Usage	: my $distance_mat = $stats->distance(-align  => $aln,
						      -method => $method);
	Function: Calculates a distance matrix for all pairwise distances of
		  sequences in an alignment.
	Returns : Array ref
	Args	: -align  => Bio::Align::AlignI object
		  -method => String specifying specific distance method
			     (implementing class may assume a default)

   available_distance_methods
	Title	: available_distance_methods
	Usage	: my @methods = $stats->available_distance_methods();
	Function: Enumerates the possible distance methods
	Returns : Array of strings
	Args	: none

perl v5.14.2							    2012-03-02					      Bio::Align::StatisticsI(3pm)