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Full Discussion: Convert Excel File (xls) to tab delimited text file on AIX
Top Forums UNIX for Beginners Questions & Answers Convert Excel File (xls) to tab delimited text file on AIX Post 302966916 by cero on Thursday 18th of February 2016 02:45:27 AM
Old 02-18-2016
I used Perl the last time I had to deal with Excel in a *nix environment.
You can take this script as a starting point if Perl is installed and if you're able to obtain the ParseExcel module (just replace the semicolon with a tab):
Code:
#!/usr/bin/perl -w

# convert an excel file to a .csv file

use strict;
use Spreadsheet::ParseExcel;

if ($#ARGV != 1) {
   print "\nUsage: excel2csv.pl <workbook_name> <worksheet_name>\n";
   exit;
}

my $workbook_name         = $ARGV[0];
my $worksheet_name        = $ARGV[1];

my $parser                = Spreadsheet::ParseExcel->new();
my $workbook              = $parser->parse( "$workbook_name" );
my $worksheet             = $workbook->worksheet( "$worksheet_name" );

if ( !defined $workbook ) {
   die $parser-error(), ".\n";
}

my ( $row_min, $row_max ) = $worksheet->row_range();
my ( $col_min, $col_max ) = $worksheet->col_range();
my $output                = '';
for my $row ( $row_min .. $row_max ) {
   for my $col ( $col_min .. $col_max ) {
      my $cell            = $worksheet->get_cell( $row, $col );
      if ( $cell ) {
         my $cell_value   = $cell->value();
         $cell_value      =~ s/\;/,/g;
         $output          = $output . $cell_value . ';';
      }
      else {
         $output          = $output . ';';
      }
   }
   print "$output\n";
   $output                = '';
}

 

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LEARN ABOUT DEBIAN

csv2mipe

CSV2MIPE(1)						User Contributed Perl Documentation					       CSV2MIPE(1)

NAME

       csv2mipe.pl - Generates MIPE file based on 3 tab-delimited files
	 based on MIPE version v1.1
	 arguments: * tab-delimited file with PCR-level data
		    * tab-delimited file with SNP-level data
		    * tab-delimited file with assay-level data

	 Columns in file with PCR-level data:
	   pcr_id
	   pcr_modified (might be multiple, divided by semi-colon ";")
	   pcr_project (might be multiple, divided by semi-colon ";")
	   pcr_researcher (might be multiple, divided by semi-colon ";")
	   pcr_species
	   source_type
	   source_id
	   design_seq
	   primer1_oligo
	   primer1_seq
	   primer1_tm
	   primer2_oligo
	   primer2_seq
	   primer2_tm
	   design_remark (might be multiple, divided by semi-colon ";")
	   use_seq
	   use_revcomp
	   use_remark (might be multiple, divided by semi-colon ";")
	   pcr_remark (might be multiple, divided by semi-colon ";")

	 Columns in file with SNP-level data:
	   pcr_id
	   snp_id
	   snp_pos
	   snp_amb
	   snp_remark (might be multiple, divided by semi-colon ";")

	 Columns in file with assay-level data:
	   pcr_id
	   snp_id
	   assay_id
	   assay_type
	   assay_enzyme
	   assay_oligo
	   assay_specific
	   assay_tail
	   assay_strand
	   assay_remark (might be multiple, divided by semi-colon ";")

SYNOPSIS

       csv2mipe.pl <pcr_file.csv> <snp_file.csv> <assay_file.csv>

ADDITIONAL INFO

       See http://mipe.sourceforge.net

AUTHOR

       Jan Aerts (jan.aerts@bbsrc.ac.uk)

perl v5.14.2							    2005-07-20							       CSV2MIPE(1)
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