02-12-2016
I access files sequentially. Thank you
.
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LEARN ABOUT DEBIAN
bio::phylonetwork::treefactory
Bio::PhyloNetwork::TreeFactory(3pm) User Contributed Perl Documentation Bio::PhyloNetwork::TreeFactory(3pm)
NAME
Bio::PhyloNetwork::TreeFactory - Module to sequentially generate Phylogenetic Trees
SYNOPSIS
use strict;
use warnings;
use Bio::PhyloNetwork;
use Bio::PhyloNetwork::TreeFactory;
# Will generate sequentially all the 15 binary phylogetic
# trees with 4 leaves
my $factory=Bio::PhyloNetwork::TreeFactory->new(-numleaves=>4);
my @nets;
while (my $net=$factory->next_network()) {
push @nets,$net;
print "".(scalar @nets).": ".$net->eNewick()."
";
}
DESCRIPTION
Sequentially builds a (binary) phylogenetic tree each time next_network is called.
AUTHOR
Gabriel Cardona, gabriel(dot)cardona(at)uib(dot)es
SEE ALSO
Bio::PhyloNetwork
APPENDIX
The rest of the documentation details each of the object methods.
new
Title : new
Usage : my $factory = new Bio::PhyloNetwork::TreeFactory();
Function: Creates a new Bio::PhyloNetwork::TreeFactory
Returns : Bio::PhyloNetwork::RandomFactory
Args : -numleaves => integer
OR
-leaves => reference to an array (of leaves names)
Returns a Bio::PhyloNetwork::TreeFactory object. Such an object will sequentially create binary phylogenetic trees each time next_network
is called.
If the parameter -leaves=>@leaves is given, then the set of leaves of these networks will be @leaves. If it is given the parameter
-numleaves=>$numleaves, then the set of leaves will be "l1"..."l$numleaves".
next_network
Title : next_network
Usage : my $net=$factory->next_network()
Function: returns a tree
Returns : Bio::PhyloNetwork
Args : none
perl v5.14.2 2012-03-02 Bio::PhyloNetwork::TreeFactory(3pm)