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fastaoverlap

EXONERATE(1)						      General Commands Manual						      EXONERATE(1)

NAME

       exonerate - suite for investigating DNA and RNA sequence similarities

SYNOPSIS

       exonerate-client [--help]
       exonerate-server [--help]
       fasta2esd [--help]
       fastaannotatecdna [--help]
       fastachecksum [--help]
       fastaclean [--help]
       fastaclip [--help]
       fastacomposition [--help]
       fastadiff [--help]
       fastaexplode [--help]
       fastafetch [--help]
       fastahardmask [--help]
       fastaindex [--help]
       fastalength [--help]
       fastanrdb [--help]
       fastaoverlap [--help]
       fastareformat [--help]
       fastaremove [--help]
       fastarevcomp [--help]
       fastasoftmask [--help]
       fastasort [--help]
       fastasplit [--help]
       fastasubseq [--help]
       fastatranslate [--help]
       fastavalidcds [--help]

DESCRIPTION

       These  programs	are  not  described by the upstream author, however, some information is available via the --help and -h arguments for all
       these programs. Whoever is using any of these programs in routine, is requested to provide a seed of a respective man page to the  upstream
       author.

OPTIONS

       -h,    --help Show summary of options.

       -v, --version
	      Show version of program.

SEE ALSO

       http://www.ebi.ac.uk/~guy/exonerate/
       The   author   of   this   package   provides   a   beginner   (   http://www.ebi.ac.uk/~guy/exonerate/beginner.html   )  and  and  avanced
       http://www.ebi.ac.uk/~guy/exonerate/advanced.html ) tutorial on his web pages.

AUTHOR

       exonerate was written by Guy Slater <guy@ebi.ac.uk>.

       This manual page was written by Steffen Moeller for the Debian project (but may be used by others).

								    30 Jun 2007 						      EXONERATE(1)