01-08-2016
This is completely subjective - what is 'greatest' for me may be awful for you.
I would start by trying out different ones, for example, Eclipse is very good for most things but has some weird make rules.
What you will get here in this thread is a lot of 'xxx is the Best!' You are the one who is stuck with having to work through issues with your IDE, not some other coder 8000 km away.
Because I have used UltraEdit for the past 15 years I tend to like it. Not because it is really a good IDE necessarily, but because I've learned how to do all kinds of things with it. Having to relearn a wholly new environment would be, for me, an unacceptable waste of time.
This User Gave Thanks to jim mcnamara For This Post:
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LEARN ABOUT DEBIAN
fastaoverlap
EXONERATE(1) General Commands Manual EXONERATE(1)
NAME
exonerate - suite for investigating DNA and RNA sequence similarities
SYNOPSIS
exonerate-client [--help]
exonerate-server [--help]
fasta2esd [--help]
fastaannotatecdna [--help]
fastachecksum [--help]
fastaclean [--help]
fastaclip [--help]
fastacomposition [--help]
fastadiff [--help]
fastaexplode [--help]
fastafetch [--help]
fastahardmask [--help]
fastaindex [--help]
fastalength [--help]
fastanrdb [--help]
fastaoverlap [--help]
fastareformat [--help]
fastaremove [--help]
fastarevcomp [--help]
fastasoftmask [--help]
fastasort [--help]
fastasplit [--help]
fastasubseq [--help]
fastatranslate [--help]
fastavalidcds [--help]
DESCRIPTION
These programs are not described by the upstream author, however, some information is available via the --help and -h arguments for all
these programs. Whoever is using any of these programs in routine, is requested to provide a seed of a respective man page to the upstream
author.
OPTIONS
-h, --help Show summary of options.
-v, --version
Show version of program.
SEE ALSO
http://www.ebi.ac.uk/~guy/exonerate/
The author of this package provides a beginner ( http://www.ebi.ac.uk/~guy/exonerate/beginner.html ) and and avanced
http://www.ebi.ac.uk/~guy/exonerate/advanced.html ) tutorial on his web pages.
AUTHOR
exonerate was written by Guy Slater <guy@ebi.ac.uk>.
This manual page was written by Steffen Moeller for the Debian project (but may be used by others).
30 Jun 2007 EXONERATE(1)