Good Morning,
I was wondering if anybody could tell me how to achieve the following, preferably with a little commenting for understanding.
I have 2 files, each with multiple rows with multiple columns.
I need to find each row where the value in column 1 of file 1 matches column 1... (10 Replies)
My current issue is dealing with two space delimited files.
The first file has column 1 as the sample ID's, then columns 2 - n as the observations. The second file has column 1 as the sample ID's, column 2 as the mother ID's, column 3 as the father ID's, column 4 as the gender, and column 5... (3 Replies)
I have two files... file1 and file2.
Where columns 1 and 2 of file1 match columns 1 and 2 of file2 I want to create a new file that is all file1 + columns 3 and 4 of file2
:b: Many thanks if you know how to do this.... :b:
file1
31-101 106 0 92
31-101 106 29 ... (2 Replies)
Hey fellas!
Here come my problem. I appreciate if you have a look at it.
I have several files with following structure:
file_1:1 21
4 45
file_2:2 31
4 153
6 341
and so on...
and I have a 'reference' file look like this:
File_ref:A 1
B 2
C 3 (5 Replies)
Hello,
I have two files which are of the following format
File 1 which has two columns
Protein_ID Substitution
NP_997239 T53R
NP_060668 V267M
NP_058515 P856A
NP_001206 T55M
NP_006601 D371Y ... (2 Replies)
I have two files I want to match ids in the 5th column of the file 1 with the first column of the file 2 and get the description for the matched ids as shown in the output
sno nm no nm2 ID
1 cc 574372 yyyi |6810|51234|
2 bb 119721 nmjk |6810|51234|51179| ... (4 Replies)
I would like to join two files when two columns in each file matches with each other and then produce an output when taking multiple columns.
Like I have file A
1234,ABCD,23,JOHN,NJ,USA
2345,ABCD,24,SAM,NY,USA
5678,GHIJ,24,TOM,NY,USA
5678,WXYZ,27,MAT,NJ,USA
and file B
... (2 Replies)
I have the following format of input from multiple files
File 1
24.01 -81.01 1.0
24.02 -81.02 5.0
24.03 -81.03 0.0
File 2
24.01 -81.01 2.0
24.02 -81.02 -5.0
24.03 -81.03 10.0
I need to scan through the files and when the first 2 columns match I... (18 Replies)
Hi,
i have 2 files , the data i need to match is in masterfile and i need to pull out column 3 from master if column 1 and 2 match and output entire row to new file
I have tried with join and awk and i keep getting blank outputs or same file
is there an easier way than what i am... (4 Replies)
Discussion started by: axis88
4 Replies
LEARN ABOUT DEBIAN
h5jam
h5jam(1) General Commands Manual h5jam(1)NAME
h5jam - Add a user block to a HDF5 file
SYNOPSIS
h5jam -u user_block -i in_file.h5 [-o out_file.h5] [--clobber]
DESCRIPTION
h5jam concatenates a user_block file and an HDF5 file to create an HDF5 file with a user block. The user block can be either binary or
text. The output file is padded so that the HDF5 header begins on byte 512, 1024, etc.. (See the HDF5 File Format.)
If out_file.h5 is given, a new file is created with the user_block followed by the contents of in_file.h5. In this case, infile.h5 is
unchanged.
If out_file.h5 is not specified, the user_block is added to in_file.h5.
If in_file.h5 already has a user block, the contents of user_block will be added to the end of the existing user block, and the file
shifted to the next boundary. If --clobber is set, any existing user block will be overwritten.
EXAMPLE USAGE
Create new file, newfile.h5, with the text in file mytext.txt as the user block for the HDF5 file file.h5.
h5jam -u mytext.txt -i file.h5 -o newfile.h5
Add text in file mytext.txt to front of HDF5 dataset, file.h5.
h5jam -u mytext.txt -i file.h5
Overwrite the user block (if any) in file.h5 with the contents of mytext.txt.
h5jam -u mytext.txt -i file.h5 --clobber
RETURN VALUE
h5jam returns the size of the output file, or -1 if an error occurs.
CAVEATS
This tool copies all the data (sequentially) in the file(s) to new offsets. For a large file, this copy will take a long time.
The most efficient way to create a user block is to create the file with a user block (see H5Pset_user_block), and write the user block
data into that space from a program.
The user block is completely opaque to the HDF5 library and to the h5jam and h5unjam tools. The user block is simply read or written as a
string of bytes, which could be text or any kind of binary data. It is up to the user to know what the contents of the user block means
and how to process it.
When the user block is extracted, all the data is written to the output, including any padding or unwritten data.
This tool moves the HDF5 file through byte copies, i.e., it does not read or interpret the HDF5 objects.
SEE ALSO h5dump(1), h5ls(1), h5diff(1), h5import(1), gif2h5(1), h52gif(1), h5perf(1), h5unjam(1).
h5jam(1)