Sponsored Content
Top Forums Shell Programming and Scripting Match pattern from file 1 with any/all columns in file 2 Post 302962261 by MadeInGermany on Thursday 10th of December 2015 03:01:26 PM
Old 12-10-2015
Better loop over the fields, and the look-up in the array is exact and maybe even faster.
Code:
awk 'NR==FNR {T[$3]=$0; next} {for (i=1;i<=NF;i++) if ($i in T) print T[$i], $1}' FS=, OFS=, file[12]

---------- Post updated at 03:01 PM ---------- Previous update was at 02:29 PM ----------

"break" the loop if found once, and with the latest requirement
Code:
awk 'NR==FNR {T[$3]=$0; next} {for (i=1;i<=NF;i++) if ($i in T) {print T[$i], $1; seen[$i]; break}} END {for (t in T) if (!(t in seen)) print T[t]}' FS=, OFS=, file1 file2

This User Gave Thanks to MadeInGermany For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Get columns from another file for match in col 2 in 1st file

Hi, My first file has 592155 9 rs16916098 1 592156 19 rs7249604 1 592157 4 rs885156 1 592158 5 rs350067 12nd file has 9 rs16916098 0 113228129 2 4 19 rs7249604 0 58709070 4 2 2 rs17042833 0 113558750 4 2... (2 Replies)
Discussion started by: genehunter
2 Replies

2. Shell Programming and Scripting

extracting columns using pattern file from source file

Hi experts,Please help me for the below requirement. i have a source file.(lets say contains 50 columns). I am extarcting five columns from the source file by using pattern file. for example input file:--------a,b,c,d,"a,g","v b",s,koutputfile=======a,"a,g","v b",s,kThanks in advance subhendu (2 Replies)
Discussion started by: subhendu81
2 Replies

3. Shell Programming and Scripting

AWK match $1 $2 pattern in file 1 to $1 $2 pattern in file2

Hi, I have 2 files that I have modified to basically match each other, however I want to determine what (if any) line in file 1 does not exist in file 2. I need to match column $1 and $2 as a single string in file1 to $1 and $2 in file2 as these two columns create a match. I'm stuck in an AWK... (9 Replies)
Discussion started by: right_coaster
9 Replies

4. Shell Programming and Scripting

Match and print columns in second file

Hi All, I have to match each row in file 1 with 1st row in file 2 and print the corresponding column from file2. I am trying to use an awk script to do this. For example cat File1 X1 X3 X4 cat File2 ID X1 X2 X3 X4 A 1 6 2 1 B 2 7 3 3 C 3 8 4 1 D 4 9 1 1 (3 Replies)
Discussion started by: newpro
3 Replies

5. Shell Programming and Scripting

Pattern match till the end of the file.

I have a file which is like this ……………………………………….. ………………………………… ………………………………… …………………………………… ……………………………………. ……………………………… <<<from_here>>> ……………………………… ………………………………. I want a script which would fetch the data starting from <<<from_here>>> in the file till the end... (2 Replies)
Discussion started by: halfafringe
2 Replies

6. Shell Programming and Scripting

awk Pattern Match One File to Another

I want to read from file 1 and pattern match in file two and print field two from the next line. File 1: user1 user2 user3 File 2: name=user1 gud=12345 name=user2 gud=32456 I have this pattern hardcoded but can't work out how to pass file 1 to the pattern match: (6 Replies)
Discussion started by: u20sr
6 Replies

7. Shell Programming and Scripting

Help with ksh-to read ip file & append lines to another file based on pattern match

Hi, I need help with this- input.txt : L B white X Y white A B brown M Y black Read this input file and if 3rd column is "white", then add specific lines to another file insert.txt. If 3rd column is brown, add different set of lines to insert.txt, and so on. For example, the given... (6 Replies)
Discussion started by: prashob123
6 Replies

8. Shell Programming and Scripting

awk pattern match not printing desired columns

Hi all, I'm trying to match the following two files with the code below: awk -F, 'NR==FNR {a=$0; next} ($12,$4) in a {print $12,$1,a}' OFS="," file4.csv file3.csv but the code does not print the entire row from file4 in addition to column 12 and 1 of file3. file4: o,c,q,co,ov,b... (1 Reply)
Discussion started by: bkane3
1 Replies

9. Shell Programming and Scripting

Match Columns in one file and extract columns from another file

Kindly help merging information from two files with the following data structure. I want to match for the CHR-SNP in Foo and get the columns that match from CHROM-rsID Fields 1 & 2 of foo may have duplicates, however, a joint key of Fields $1$2$3$4 is unique. Also would be helpful to clean up... (4 Replies)
Discussion started by: genehunter
4 Replies

10. UNIX for Beginners Questions & Answers

Match pattern only between certain lines in entire file

Hello, I have input that looks like this: * 0 -1 103 0 0 m. 7 LineNr 23 ClauseNr 1: 1: 1: 304: 0 0 SentenceNr 13 TxtType: Q Pargr: 2.1 ClType:MSyn PS004,006 ZBX= 0 1 1 0 7 -1 -1 3 2 3 2 -1 1 1 -1 -1 -1 -1 0 501 0 PS004,006 ZBX ... (2 Replies)
Discussion started by: jvoot
2 Replies
A2P(1)							 Perl Programmers Reference Guide						    A2P(1)

NAME
a2p - Awk to Perl translator SYNOPSIS
a2p [options] [filename] DESCRIPTION
A2p takes an awk script specified on the command line (or from standard input) and produces a comparable perl script on the standard output. OPTIONS Options include: -D<number> sets debugging flags. -F<character> tells a2p that this awk script is always invoked with this -F switch. -n<fieldlist> specifies the names of the input fields if input does not have to be split into an array. If you were translating an awk script that processes the password file, you might say: a2p -7 -nlogin.password.uid.gid.gcos.shell.home Any delimiter can be used to separate the field names. -<number> causes a2p to assume that input will always have that many fields. -o tells a2p to use old awk behavior. The only current differences are: o Old awk always has a line loop, even if there are no line actions, whereas new awk does not. o In old awk, sprintf is extremely greedy about its arguments. For example, given the statement print sprintf(some_args), extra_args; old awk considers extra_args to be arguments to "sprintf"; new awk considers them arguments to "print". "Considerations" A2p cannot do as good a job translating as a human would, but it usually does pretty well. There are some areas where you may want to examine the perl script produced and tweak it some. Here are some of them, in no particular order. There is an awk idiom of putting int() around a string expression to force numeric interpretation, even though the argument is always integer anyway. This is generally unneeded in perl, but a2p can't tell if the argument is always going to be integer, so it leaves it in. You may wish to remove it. Perl differentiates numeric comparison from string comparison. Awk has one operator for both that decides at run time which comparison to do. A2p does not try to do a complete job of awk emulation at this point. Instead it guesses which one you want. It's almost always right, but it can be spoofed. All such guesses are marked with the comment ""#???"". You should go through and check them. You might want to run at least once with the -w switch to perl, which will warn you if you use == where you should have used eq. Perl does not attempt to emulate the behavior of awk in which nonexistent array elements spring into existence simply by being referenced. If somehow you are relying on this mechanism to create null entries for a subsequent for...in, they won't be there in perl. If a2p makes a split line that assigns to a list of variables that looks like (Fld1, Fld2, Fld3...) you may want to rerun a2p using the -n option mentioned above. This will let you name the fields throughout the script. If it splits to an array instead, the script is probably referring to the number of fields somewhere. The exit statement in awk doesn't necessarily exit; it goes to the END block if there is one. Awk scripts that do contortions within the END block to bypass the block under such circumstances can be simplified by removing the conditional in the END block and just exiting directly from the perl script. Perl has two kinds of array, numerically-indexed and associative. Perl associative arrays are called "hashes". Awk arrays are usually translated to hashes, but if you happen to know that the index is always going to be numeric you could change the {...} to [...]. Iteration over a hash is done using the keys() function, but iteration over an array is NOT. You might need to modify any loop that iterates over such an array. Awk starts by assuming OFMT has the value %.6g. Perl starts by assuming its equivalent, $#, to have the value %.20g. You'll want to set $# explicitly if you use the default value of OFMT. Near the top of the line loop will be the split operation that is implicit in the awk script. There are times when you can move this down past some conditionals that test the entire record so that the split is not done as often. For aesthetic reasons you may wish to change index variables from being 1-based (awk style) to 0-based (Perl style). Be sure to change all operations the variable is involved in to match. Cute comments that say "# Here is a workaround because awk is dumb" are passed through unmodified. Awk scripts are often embedded in a shell script that pipes stuff into and out of awk. Often the shell script wrapper can be incorporated into the perl script, since perl can start up pipes into and out of itself, and can do other things that awk can't do by itself. Scripts that refer to the special variables RSTART and RLENGTH can often be simplified by referring to the variables $`, $& and $', as long as they are within the scope of the pattern match that sets them. The produced perl script may have subroutines defined to deal with awk's semantics regarding getline and print. Since a2p usually picks correctness over efficiency. it is almost always possible to rewrite such code to be more efficient by discarding the semantic sugar. For efficiency, you may wish to remove the keyword from any return statement that is the last statement executed in a subroutine. A2p catches the most common case, but doesn't analyze embedded blocks for subtler cases. ARGV[0] translates to $ARGV0, but ARGV[n] translates to $ARGV[$n-1]. A loop that tries to iterate over ARGV[0] won't find it. ENVIRONMENT
A2p uses no environment variables. AUTHOR
Larry Wall <larry@wall.org> FILES
SEE ALSO
perl The perl compiler/interpreter s2p sed to perl translator DIAGNOSTICS
BUGS
It would be possible to emulate awk's behavior in selecting string versus numeric operations at run time by inspection of the operands, but it would be gross and inefficient. Besides, a2p almost always guesses right. Storage for the awk syntax tree is currently static, and can run out. perl v5.12.4 2011-06-01 A2P(1)
All times are GMT -4. The time now is 05:25 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy