Sponsored Content
Top Forums Shell Programming and Scripting Extracting values based on line-column numbers from multiple text files Post 302960898 by RudiC on Saturday 21st of November 2015 08:55:32 AM
Old 11-21-2015
first approximation:
Code:
awk '
FNR == 1        {FC++
                 FN = FILENAME
                 if (FC < 3)    {OUT[FC] =  FN ".new"
                                 print > OUT[FC]
                                 next
                                }
                 printf "%s", LIN[FN,1] > OUT[1]
                 printf "%s", LIN[FN,2] > OUT[2]
                }
FC < 3          {LIN[$1,FC] = $0
                 BEG[$1,FC] = $2
                 STP[$1,FC] = $3
                 next
                }

FNR == BEG[FN,1]        {printf "\t%s\n", $STP[FN,1] > OUT[1]   
                        }
FNR == BEG[FN,2], \
FNR == STP[FN,2]        {printf "\t%s", $2 > OUT[2]
                        }
FNR == STP[FN,2]        {printf "\n"  > OUT[2]
                        }
'  task[12] file1
task1.new:
FileName    lineNumber    ColumnNumber    value    
file1    5    4    45
task2.new:
FileName    Line-start    line-end
file1    4    8    32    43    35    38    78

These 2 Users Gave Thanks to RudiC For This Post:
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

Joining multiple files based on one column with different and similar values (shell or perl)

Hi, I have nine files looking similar to file1 & file2 below. File1: 1 ABCA1 1 ABCC8 1 ABR:N 1 ACACB 1 ACAP2 1 ACOT1 1 ACSBG 1 ACTR1 1 ACTRT 1 ADAMT 1 AEN:N 1 AKAP1File2: 1 A4GAL 1 ACTBL 1 ACTL7 (4 Replies)
Discussion started by: seqbiologist
4 Replies

2. UNIX for Dummies Questions & Answers

Extracting rows from a text file based on the first column

I have a tab delimited text file where the first column can take on three different values : 100, 150, 250. I want to extract all the rows where the first column is 100 and put them into a separate text file and so on. This is what my text file looks like now: 100 rs3794811 0.01 0.3434... (1 Reply)
Discussion started by: evelibertine
1 Replies

3. UNIX for Dummies Questions & Answers

Extracting rows from a text file based on numerical values of a column

I have a text file where the second column is a list of numbers going from small to large. I want to extract the rows where the second column is smaller than or equal to 0.0001. My input: rs10082730 9e-08 12 46002702 rs2544081 1e-07 12 46015487 rs1425136 1e-06 7 35396742 rs2712590... (1 Reply)
Discussion started by: evelibertine
1 Replies

4. UNIX for Dummies Questions & Answers

Extracting rows from a space delimited text file based on the values of a column

I have a space delimited text file. I want to extract rows where the third column has 0 as a value and write those rows into a new space delimited text file. How do I go about doing that? Thanks! (2 Replies)
Discussion started by: evelibertine
2 Replies

5. Shell Programming and Scripting

Generate Codes based on start and End values of numbers in a column

Hello All, Could you please help with this. This is what I have: 506234.222 2 506234.222 2 506234.222 2 506234.222 2 508212.200 2 508212.200 2 333456.111 2 333456.111 2 333456.111 2 333456.111 2 But this is what I want: 506234.222 1 506234.222 2 506234.222 2 506234.222 3 (5 Replies)
Discussion started by: canimba
5 Replies

6. Shell Programming and Scripting

Split a file into multiple files based on line numbers and first column value

Hi All I have one query,say i have a requirement like the below code should be move to diffent files whose maximum lines can be of 10 lines.Say in the below example,it consist of 14 lines. This should be moved logically using the data in the fisrt coloumn to file1 and file 2.The data of first... (2 Replies)
Discussion started by: sarav.shan
2 Replies

7. UNIX for Dummies Questions & Answers

Extracting rows from a text file based on the values of two columns (given ranges)

Hi, I have a tab delimited text file with multiple columns. The second and third columns include numbers that have not been sorted. I want to extract rows where the second column includes a value between -0.01 and 0.01 (including both numbers) and the first third column includes a value between... (1 Reply)
Discussion started by: evelibertine
1 Replies

8. UNIX for Dummies Questions & Answers

Extracting lines from a text file based on another text file with line numbers

Hi, I am trying to extract lines from a text file given a text file containing line numbers to be extracted from the first file. How do I go about doing this? Thanks! (1 Reply)
Discussion started by: evelibertine
1 Replies

9. Shell Programming and Scripting

Extracting lines from text files in folder based on the numbers in another file

Hello, I have a file ff.txt that looks as follows *ABNA.txt 356 24 36 112 *AC24.txt 457 458 321 2 ABNA.txt and AC24.txt are the files in the folder named foo1. Based on the numbers in the ff.txt file, I want to extract the lines from the corresponding files in the foo1 folder and... (2 Replies)
Discussion started by: mohamad
2 Replies

10. Shell Programming and Scripting

Script for extracting data from csv file based on column values.

Hi all, I am new to shell script.I need your help to write a shell script. I need to write a shell script to extract data from a .csv file where columns are ',' separated. The file has 5 columns having values say column 1,column 2.....column 5 as below along with their valuesm.... (3 Replies)
Discussion started by: Vivekit82
3 Replies
JOIN(1) 						      General Commands Manual							   JOIN(1)

NAME
join - relational database operator SYNOPSIS
join [-an] [-e s] [-o list] [-tc] file1 file2 DESCRIPTION
Join forms, on the standard output, a join of the two relations specified by the lines of file1 and file2. If file1 is `-', the standard input is used. File1 and file2 must be sorted in increasing ASCII collating sequence on the fields on which they are to be joined, normally the first in each line. There is one line in the output for each pair of lines in file1 and file2 that have identical join fields. The output line normally con- sists of the common field, then the rest of the line from file1, then the rest of the line from file2. Fields are normally separated by blank, tab or newline. In this case, multiple separators count as one, and leading separators are dis- carded. These options are recognized: -an In addition to the normal output, produce a line for each unpairable line in file n, where n is 1 or 2. -e s Replace empty output fields by string s. -o list Each output line comprises the fields specified in list, each element of which has the form n.m, where n is a file number and m is a field number. -tc Use character c as a separator (tab character). Every appearance of c in a line is significant. SEE ALSO
sort(1), comm(1), awk(1). BUGS
With default field separation, the collating sequence is that of sort -b; with -t, the sequence is that of a plain sort. The conventions of join, sort, comm, uniq, look and awk(1) are wildly incongruous. 7th Edition April 29, 1985 JOIN(1)
All times are GMT -4. The time now is 03:41 AM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy