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Top Forums Shell Programming and Scripting awk to parse field and include the text of 1 pipe in field 4 Post 302959904 by Aia on Saturday 7th of November 2015 12:20:16 PM
Old 11-07-2015
Quote:
Originally Posted by cmccabe
I had something similar @Aia

Code:
awk '{split($4,a,"|"); print $1,$2,$3,a[1],"|",a[3],$6}' input
chr1 955543 955763 AGRN-6 | gc=75 + 
chr1 957571 957852 AGRN-7 | gc=61.2 + 
chr1 970621 970740 AGRN-8 | gc=57.1 +

but that outputs everything on one line. Your awkis much better, thank you Smilie.
Yes, those highlighted red commas get translated into OFS.

Here's a Perl alternative:
Code:
 perl -pe 's/(\|\w+=[\w\.]+){1,2}\s+\d+/$1/' cmccabe.file

 

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set_color(1)							       fish							      set_color(1)

NAME
set_color - set_color - set the terminal color set_color - set the terminal color Synopsis set_color [-v --version] [-h --help] [-b --background COLOR] [COLOR] Description Change the foreground and/or background color of the terminal. COLOR is one of black, red, green, brown, yellow, blue, magenta, purple, cyan, white and normal. o -b, --background Set the background color o -c, --print-colors Prints a list of all valid color names o -h, --help Display help message and exit o -o, --bold Set bold or extra bright mode o -u, --underline Set underlined mode o -v, --version Display version and exit Calling set_color normal will set the terminal color to whatever is the default color of the terminal. Some terminals use the --bold escape sequence to switch to a brighter color set. On such terminals, set_color white will result in a grey font color, while set_color --bold white will result in a white font color. Not all terminal emulators support all these features. This is not a bug in set_color but a missing feature in the terminal emulator. set_color uses the terminfo database to look up how to change terminal colors on whatever terminal is in use. Some systems have old and incomplete terminfo databases, and may lack color information for terminals that support it. Download and install the latest version of ncurses and recompile fish against it in order to fix this issue. Version 1.23.1 Sun Jan 8 2012 set_color(1)
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