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Top Forums Shell Programming and Scripting awk to parse field and include the text of 1 pipe in field 4 Post 302959903 by cmccabe on Saturday 7th of November 2015 11:35:34 AM
Old 11-07-2015
I had something similar @Aia

Code:
awk '{split($4,a,"|"); print $1,$2,$3,a[1],"|",a[3],$6}' input
chr1 955543 955763 AGRN-6 | gc=75 + 
chr1 957571 957852 AGRN-7 | gc=61.2 + 
chr1 970621 970740 AGRN-8 | gc=57.1 +

but that outputs everything on one line. Your awkis much better, thank you Smilie.
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IGAWK(1)							 Utility Commands							  IGAWK(1)

NAME
igawk - gawk with include files SYNOPSIS
igawk [ all gawk options ] -f program-file [ -- ] file ... igawk [ all gawk options ] [ -- ] program-text file ... DESCRIPTION
Igawk is a simple shell script that adds the ability to have ``include files'' to gawk(1). AWK programs for igawk are the same as for gawk, except that, in addition, you may have lines like @include getopt.awk in your program to include the file getopt.awk from either the current directory or one of the other directories in the search path. OPTIONS
See gawk(1) for a full description of the AWK language and the options that gawk supports. EXAMPLES
cat << EOF > test.awk @include getopt.awk BEGIN { while (getopt(ARGC, ARGV, "am:q") != -1) ... } EOF igawk -f test.awk SEE ALSO
gawk(1) Effective AWK Programming, Edition 1.0, published by the Free Software Foundation, 1995. AUTHOR
Arnold Robbins (arnold@skeeve.com). Free Software Foundation Nov 3 1999 IGAWK(1)
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