Sponsored Content
Top Forums Shell Programming and Scripting awk to parse field and include the text of 1 pipe in field 4 Post 302959901 by cmccabe on Saturday 7th of November 2015 10:45:24 AM
Old 11-07-2015
That `awk` produces:

Code:
chr1    955543    955763    AGRN-6|pr=2|gc=75    +    
 
chr1    957571    957852    AGRN-7|pr=3|gc=61.2    +  
   
chr1    970621    970740    AGRN-8|pr=1|gc=57.1    +

The |pr=2, |pr=3, and pr=1 is not needed and there looks to be a line skipped each after each row and that will may be problematic for later analysis.

Thank you Smilie.
 

10 More Discussions You Might Find Interesting

1. Shell Programming and Scripting

How to parse a text file with \034 as field and \035 as end of message delimiter?

I need some tips to write a unix korn shell script that will parse an input text file. Input text file has messages that span several lines, each field in the message is delimited by /034 and the end of message is delimited by /035. Input file looks something similar to ... (1 Reply)
Discussion started by: indianya
1 Replies

2. Shell Programming and Scripting

how to include field in the output filename of awk

Im using awk and I want the output filename to contain the first field of the input file. Ex. 1 dddd wwwww 1 eeeee wwww 1 wwww eerrrr 2 eeee eeeeee I want the output files to be xxx1 and xxx2 Thank you (4 Replies)
Discussion started by: yahyaaa
4 Replies

3. UNIX for Dummies Questions & Answers

Replacing a field in pipe delimited TEXT File

Hi, I want to replace a field in a text delimited file with the actual number of records in the same file. HDR|ABCD|10-13-2008 to 10-19-2008.txt|10-19-2008|XYZ DTL|0|5464-1|0|02-02-2008|02-03-2008||||F||||||||| DTL|1|5464-1|1|02-02-2008|02-03-2008|1||JJJ... (3 Replies)
Discussion started by: ravi0435
3 Replies

4. Shell Programming and Scripting

Using AWK to parse a delimited field

Hi everyone! How can I parse a delimited field using AWK? For example, if I have lastName#firstName or lastName*firstName. I'd like an AWK script that would return lastName and then another that would return firstName? Is this possible? (13 Replies)
Discussion started by: Fatbob
13 Replies

5. Shell Programming and Scripting

How to pass a field from awk in a pipe?

Thanks in advance : ) I try for a long time searching for a way to split a large gzip csv file into many gzip files (except for the last sub-file which is to joint the next big file's children.) All the subfiles are to be named by the field. But I only managed to split them into the... (9 Replies)
Discussion started by: Kingsley
9 Replies

6. Shell Programming and Scripting

awk, comma as field separator and text inside double quotes as a field.

Hi, all I need to get fields in a line that are separated by commas, some of the fields are enclosed with double quotes, and they are supposed to be treated as a single field even if there are commas inside the quotes. sample input: for this line, 5 fields are supposed to be extracted, they... (8 Replies)
Discussion started by: kevintse
8 Replies

7. Shell Programming and Scripting

how to parse with awk (using different fields), then group by a field?

When parsing multiple fields in a file using AWK, how do you group by one of the fields and parse by delimiters? to clarify If a file had tom | 223-2222-4444 , randofield ivan | 123-2422-4444 , random filed ... | and , are the delimiters ... How would you group by the social security... (4 Replies)
Discussion started by: Josef_Stalin
4 Replies

8. Shell Programming and Scripting

Awk Search text string in field, not all in field.

Hello, I am using awk to match text in a tab separated field and am able to do so when matching the exact word. My problem is that I would like to match any sequence of text in the tab-separated field without having to match it all. Any help will be appreciated. Please see the code below. awk... (3 Replies)
Discussion started by: rocket_dog
3 Replies

9. Shell Programming and Scripting

awk Parse And Create Multiple Files Based on Field Value

Hello: I am working parsing a large input file which will be broken down into multiples based on the second field in the file, in this case: STORE. The idea is to create each file with the corresponding store number, for example: Report_$STORENUM_$DATETIMESTAMP , and obtaining the... (7 Replies)
Discussion started by: ec012
7 Replies

10. Shell Programming and Scripting

awk to create separate files but not include specific field in output

I am trying to use awk to create (in this example) 3 seperate text file from the unique id in $1 in file, if it starts with the pattern aa. The contents of each row is used to populate each text file except for $1 which is not needed. It seems I am close but not quite get there. Thank you :). ... (3 Replies)
Discussion started by: cmccabe
3 Replies
Locale::Codes::LangFam(3pm)				 Perl Programmers Reference Guide			       Locale::Codes::LangFam(3pm)

NAME
Locale::Codes::LangFam - standard codes for language extension identification SYNOPSIS
use Locale::Codes::LangFam; $lext = code2langfam('apa'); # $lext gets 'Apache languages' $code = langfam2code('Apache languages'); # $code gets 'apa' @codes = all_langfam_codes(); @names = all_langfam_names(); DESCRIPTION
The "Locale::Codes::LangFam" module provides access to standard codes used for identifying language families, such as those as defined in ISO 639-5. Most of the routines take an optional additional argument which specifies the code set to use. If not specified, the default ISO 639-5 language family codes will be used. SUPPORTED CODE SETS
There are several different code sets you can use for identifying language families. A code set may be specified using either a name, or a constant that is automatically exported by this module. For example, the two are equivalent: $lext = code2langfam('apa','alpha'); $lext = code2langfam('apa',LOCALE_LANGFAM_ALPHA); The codesets currently supported are: alpha This is the set of three-letter (lowercase) codes from ISO 639-5 such as 'apa' for Apache languages. This is the default code set. ROUTINES
code2langfam ( CODE [,CODESET] ) langfam2code ( NAME [,CODESET] ) langfam_code2code ( CODE ,CODESET ,CODESET2 ) all_langfam_codes ( [CODESET] ) all_langfam_names ( [CODESET] ) Locale::Codes::LangFam::rename_langfam ( CODE ,NEW_NAME [,CODESET] ) Locale::Codes::LangFam::add_langfam ( CODE ,NAME [,CODESET] ) Locale::Codes::LangFam::delete_langfam ( CODE [,CODESET] ) Locale::Codes::LangFam::add_langfam_alias ( NAME ,NEW_NAME ) Locale::Codes::LangFam::delete_langfam_alias ( NAME ) Locale::Codes::LangFam::rename_langfam_code ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangFam::add_langfam_code_alias ( CODE ,NEW_CODE [,CODESET] ) Locale::Codes::LangFam::delete_langfam_code_alias ( CODE [,CODESET] ) These routines are all documented in the Locale::Codes::API man page. SEE ALSO
Locale::Codes The Locale-Codes distribution. Locale::Codes::API The list of functions supported by this module. http://www.loc.gov/standards/iso639-5/id.php ISO 639-5 . AUTHOR
See Locale::Codes for full author history. Currently maintained by Sullivan Beck (sbeck@cpan.org). COPYRIGHT
Copyright (c) 2011-2013 Sullivan Beck This module is free software; you can redistribute it and/or modify it under the same terms as Perl itself. perl v5.18.2 2013-11-04 Locale::Codes::LangFam(3pm)
All times are GMT -4. The time now is 09:08 PM.
Unix & Linux Forums Content Copyright 1993-2022. All Rights Reserved.
Privacy Policy